<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13813

Description Uncharacterized protein
SequenceMDILNNLTIHLSNETSIDAKELETIKIKLTQLNESLTSFLNLHPQTPWPLILDKFNILISRYSQLLQVVSCKFLKECVIHPESLPEVDPDSLPRFLLRTKFIPEIEEMESNLIVSIAGDNNQYNWIDETKMKEVLKTWENQINNQDEISEKAINFFENERKKYDFKKRIPLNEKRKRLRPELPRRRKHRASVLKKRMLSSQSKLETSPLSQTLILSSSNLGTETEDSKSMLSETITDLGTITDSETSSIVTESTNIVEEKDSDEDESNDDLTSKATSKIMSGDEDSVITSATGTTTSTTSMTLNSSKLGSFYGAKRINRTSTLRNELDYNSESDYEDTYNYDESSSESEKESEKKETENDKKQENKKLKSKINIPEFNSQEGILEKMICWLERGGEFK
Length398
PositionHead
OrganismNeocallimastix californiae
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Neocallimastigomycetes> Neocallimastigales> Neocallimastigaceae> Neocallimastix.
Aromaticity0.06
Grand average of hydropathy-0.820
Instability index54.95
Isoelectric point5.02
Molecular weight45702.61
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13813
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      60.43|      15|      15|     215|     229|       1
---------------------------------------------------------------------------
  200-  213 (16.96/ 7.67)	.SQ..SKLETSPLSQTL
  215-  229 (23.76/13.87)	LSS..SNLGTETEDSKS
  231-  247 (19.70/10.17)	LSEtiTDLGTITDSETS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.45|      14|      16|     121|     134|       2
---------------------------------------------------------------------------
  121-  134 (26.67/18.70)	NQYNWIDETKMKEV
  140-  153 (23.78/15.88)	NQINNQDEISEKAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.65|      21|      89|     259|     279|       3
---------------------------------------------------------------------------
  259-  279 (34.71/18.31)	EKDSDEDESNDD...LTSKATSKI
  349-  372 (28.94/14.05)	EKESEKKETENDkkqENKKLKSKI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13813 with Med8 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ITDSETSSIVTESTNIVEEKDSDEDESNDDLTSKATSKIMSGDEDSVITSATGTTTSTTSMTLN
2) PLSQTLILSSSNLGTETEDSKSMLSETITDL
3) TLRNELDYNSESDYEDTYNYDESSSESEKESEKKETENDKKQENKKLKSKINIP
241
208
322
304
238
375










Molecular Recognition Features






MoRF SequenceStartStop




1) FYGAKRI
2) ILEKMICWLERGGEF
3) KKLKSKINI
4) KRKRLR
5) RKHRASVLKKRML
311
383
366
174
186
317
397
374
179
198