<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13813

Description Uncharacterized protein
SequenceMDILNNLTIHLSNETSIDAKELETIKIKLTQLNESLTSFLNLHPQTPWPLILDKFNILISRYSQLLQVVSCKFLKECVIHPESLPEVDPDSLPRFLLRTKFIPEIEEMESNLIVSIAGDNNQYNWIDETKMKEVLKTWENQINNQDEISEKAINFFENERKKYDFKKRIPLNEKRKRLRPELPRRRKHRASVLKKRMLSSQSKLETSPLSQTLILSSSNLGTETEDSKSMLSETITDLGTITDSETSSIVTESTNIVEEKDSDEDESNDDLTSKATSKIMSGDEDSVITSATGTTTSTTSMTLNSSKLGSFYGAKRINRTSTLRNELDYNSESDYEDTYNYDESSSESEKESEKKETENDKKQENKKLKSKINIPEFNSQEGILEKMICWLERGGEFK
Length398
PositionHead
OrganismNeocallimastix californiae
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Neocallimastigomycetes> Neocallimastigales> Neocallimastigaceae> Neocallimastix.
Aromaticity0.06
Grand average of hydropathy-0.820
Instability index54.95
Isoelectric point5.02
Molecular weight45702.61
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13813
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      60.43|      15|      15|     215|     229|       1
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  200-  213 (16.96/ 7.67)	.SQ..SKLETSPLSQTL
  215-  229 (23.76/13.87)	LSS..SNLGTETEDSKS
  231-  247 (19.70/10.17)	LSEtiTDLGTITDSETS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.45|      14|      16|     121|     134|       2
---------------------------------------------------------------------------
  121-  134 (26.67/18.70)	NQYNWIDETKMKEV
  140-  153 (23.78/15.88)	NQINNQDEISEKAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.65|      21|      89|     259|     279|       3
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  259-  279 (34.71/18.31)	EKDSDEDESNDD...LTSKATSKI
  349-  372 (28.94/14.05)	EKESEKKETENDkkqENKKLKSKI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13813 with Med8 domain of Kingdom Fungi
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