<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13808

Description "Mediator complex, subunit Med21"
SequenceMADILTQIQDELDMLLHQMASVLSVIKERAPSSPIPGQPVHPSLSEQDGHTQSASHPTQTTTQQSGSTQSAGASTQQTQQSFTDDLKELSRDLVLKEQQIELLISRLPGVGTSQKEQMERMKEVEKQLEDIERERNSAVKERAALLEKVENLIGGVGGMG
Length160
PositionMiddle
OrganismClohesyomyces aquaticus
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Lindgomycetaceae> Clohesyomyces.
Aromaticity0.01
Grand average of hydropathy-0.632
Instability index51.71
Isoelectric point4.89
Molecular weight17529.43
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	ARBA:ARBA00003669
ECO:0000256	RuleBase:RU366036

GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13808
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.69|      14|      15|      51|      65|       1
---------------------------------------------------------------------------
   51-   65 (23.32/15.11)	TQSASHPTQTTtQQS
   68-   81 (26.38/12.98)	TQSAGASTQQT.QQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.22|      10|      15|       1|      10|       2
---------------------------------------------------------------------------
    1-   10 (17.36/11.39)	MADILTQIQD
   19-   28 (15.86/ 9.93)	MASVLSVIKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.29|      15|      15|     115|     129|       3
---------------------------------------------------------------------------
  115-  129 (24.60/19.15)	KEQMERMKEVEKQLE
  133-  147 (22.69/17.17)	RERNSAVKERAALLE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13808 with Med21 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RLPGVGTSQKEQMERMKEVEKQLEDIERERNSAVKERAA
2) VIKERAPSSPIPGQPVHPSLSEQDGHTQSASHPTQTTTQQSGSTQSAGASTQQTQQSFTDDLKE
106
25
144
88










Molecular Recognition Features






MoRF SequenceStartStop




1) SFTDDLKELSRDLVLKEQQIEL
81
102