Description | Mediator of RNA polymerase II transcription subunit 19 |
Sequence | MSSHPPKRQRLNGSFSPASPPYHQAVKPNDHHTKPIVHPNTPTSPPYMSTNPQPNGGFPATATAPSTEMTPPSSVSMSQQVSQLGASASNPLPFPTPSSTTGVAFANIDSDGDVAMAEDGNDDTAQSAKNRRSNHNRQRKGKGAVLFGERGPIDGLLFKLHENEHPNSRPHGSQNLFDLYGLNNVAATVARTDPVTGEKINKLRKSYEGHIKQLHISGRPKANKIEGALTDPLRMPDEEWQSQKITGKDMKNAFNDSGSALSKNFDSLLSGALTGTAPGALPNPETQRYRTYIGTDEVKPKPGGTEGMSAGRVLQPNPGTPFSSAPSPAPRSMRPERSGAKRSYQDTSFVGYSEGFADDADSTAGEEAGPKKKQKFGFGAAHPMGMVGGVRR |
Length | 392 |
Position | Head |
Organism | Clohesyomyces aquaticus |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Lindgomycetaceae> Clohesyomyces. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.857 |
Instability index | 54.78 |
Isoelectric point | 9.44 |
Molecular weight | 41786.84 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364151 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP13804 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 91.05| 25| 27| 45| 71| 2 --------------------------------------------------------------------------- 45- 69 (47.23/18.63) PPYMSTNPQPNGGFPATATAPSTEM 71- 95 (43.82/22.07) PPSSVSMSQQVSQLGASASNPLPFP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 114.46| 27| 27| 323| 349| 3 --------------------------------------------------------------------------- 300- 319 (26.78/ 9.85) .......PKPGGTEGMSAGRVLQPNPG 323- 349 (46.44/22.61) SSAPSPAPRSMRPERSGAKRSYQDTSF 353- 378 (41.24/19.24) SEGFADDADSTAGEEAGPKKK.QKFGF --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 88.07| 26| 27| 197| 223| 4 --------------------------------------------------------------------------- 197- 223 (40.86/34.09) GEKINKLRKSYEGHIKQlHISGRPKAN 227- 252 (47.21/34.47) GALTDPLRMPDEEWQSQ.KITGKDMKN --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) HPPKRQRLNGSF 2) LLFKLH 3) PKKKQKFGF 4) QRYRTYIG 5) YHQAVKPNDHHTKPIVH | 4 156 370 287 22 | 15 161 378 294 38 |
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