<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13793
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDDQAYNMDVDDLFGDNEHVNITAIPSPPVKGLVKRLDELSASGCCQKIAWSKNGCVAYIAPDGYGVNLRVFSRDAATGKWDLGKDTPIAMPHTQDEFPFVHLSWSHLGNDLAVMDSAGHVLIFSMAIAIDRMEYRRTEISQPEAEMDTVVGLHWLAVLPHEQKNHIAWSATAKGDTWNFQVSSHVFQDAHHPVERQLSLIYLKRHGELKLRFQQTDNSWHEVATAVGPMLSTREPFTHAAFASNNDNTLLLAAYDVVGRLYLYRIETKWNPPPQPKPGHAPKPFEKPEIRVTEITVEENCYPTTSTMMNGESSTGSESRIRIPAQLTHLNFLPVTPEKDDGTLPTIIALFSTPTNIISIDQNQAHQNPYSIMVKWEVHRQKQSQLHPSLDKVTSKKKSVSSVPERDVFLLKRQADMILHSVVLTFSSLWYHMILAFCYSDGTIEFRKRATLEIIAPDFNNPNTEMVTSLSQAGFSFSTLEPAVQVSLSPNHCIAVCMQQDGTTKLRFMEYSYGSLASDDDNDPRHSAAVAALVLQSSTAANQYLSSDDIFAVMGELSEKRKRDFIHLMFQGLNVNIDCDVEEGRSNNGNQGFMLLGRSPTFVKTLSAAHILGLQGSVTRSVTSKVAWMILNIKYITQILTTIARMHIHGSMGEKRDLRPEVVPQLIGICRWIMNFMVYIMDELISLGLELRKPTTSPTPLTRDILEAKIQEMNHPAILILLSSFPRMMMKLWASPLHWVIRSAMAHTQTPQSPEHRRIYQPLHTAVADVPFDYRHFENLLTEAQMLVRNSYKRAQLTDHQRNLAERDLILGRVPDVLLPAARRLLGDSLFNEQQQQGALLDKLDPARIMFFDTTWLGLYGSDHSKEWWATHVVDVCQKMVIRGSGAQSHPSALNTRNRERSDSAAGANGHGGSGAGAGASGSGGHTEGDKKERGRKSQLRKCVRCGAYMEDVTQGMPGYALHHVSWLSGVAKHCVCGNPWMLADEKRRAK |
Length | 991 |
Position | Tail |
Organism | Clohesyomyces aquaticus |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Pleosporomycetidae> Pleosporales> Lindgomycetaceae> Clohesyomyces.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.314 |
Instability index | 42.97 |
Isoelectric point | 6.75 |
Molecular weight | 110979.28 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP13793
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 150.79| 48| 113| 23| 76| 1
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23- 76 (77.77/68.88) TAIPSPPVK.GLVKRLDELSASGCCQK..IAWSkngcvAYIAPD..GYGVNLRVFsRDA
138- 190 (73.01/48.10) TEISQPEAEmDTVVGLHWLAVLPHEQKnhIAWS.....ATAKGDtwNFQVSSHVF.QDA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 259.51| 84| 113| 415| 504| 2
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415- 504 (133.62/91.21) ADMILHSVVLTFSSLWYHMILAFCysdGTI.EFRKRATLEIIAPDFN.NPNTEMVTSLS...QAGFSFSTLEPAVQVSLSPNHCIAVcmqQDGTT
531- 619 (125.89/71.54) AALVLQSSTAANQYLSSDDIFAVM...GELsEKRKRDFIHLMFQGLNvNIDCDVEEGRSnngNQGFMLLGRSPTFVKTLSAAHILGL...QGSVT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 48.05| 13| 15| 735| 748| 4
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735- 748 (21.85/17.04) SPLHWVIRSAMaHT
753- 765 (26.20/15.68) SPEHRRIYQPL.HT
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