<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13792

Description Uncharacterized protein
SequenceMGVTCIFYIKEISAKTEIMSAMENRIINIFGGKRTDHWSVVCKLYKSVIFPRVPRELIKNSGRGESMYLLSFSSKPKHVYSIIDEKLVMEADNSLVELINKIKNIWAFRQVAKIDGYSFEIGDYSVRYGNLNVGSNSKGLLVEVEHTKSNSVTESSDLLIELIDYLIPEELYKNFKIELRRPDNGYDYTTVGLSQSKEEDLLKDINNDISKTIVPNIKMEIDNSNDTLNTAITVHSSSNEMLNINSPYSNNQSSVIETPGSLGSTIISNIVNETNKYVNADSSTTVDSLATTSNNSSSLNTSLLNASSLNSSSLNTNINKNINTNTNSNTNPKNNSLNSTTKNTINNNTVTTIPTSNPTAAVASTTATATTKKSTISTNEKSTTLPNASTISTLSPIAPIRTVGTNPLSTPLASIGAIANLNSLALNAAANSLTTTDITNYDISVGNSNTLSPLSLAPTTNGVPASPFLFNPFSNPITAANAVTTNINPSLTIFNASGLPTTANKNSVTPIPTILNPNINSTGSATPLHTTSTGLSNVFSKTKQNSLLSTINKKKKESLIHAPLSSSQITEFIQSTDSLDSTHTLKANTILLGQGSRQFSIKNSNNSQRNRNSISSLQERKEIKEVKERAHYNFIFTSKHSAYQYINFLRSENIL
Length655
PositionHead
OrganismNeocallimastix californiae
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Neocallimastigomycetes> Neocallimastigales> Neocallimastigaceae> Neocallimastix.
Aromaticity0.05
Grand average of hydropathy-0.344
Instability index37.21
Isoelectric point8.89
Molecular weight71101.68
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13792
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     179.57|      25|      25|     300|     324|       1
---------------------------------------------------------------------------
  300-  324 (42.70/20.27)	N...T.SLLN..ASSLNSSSLNTNINKNINT
  325-  351 (26.49/ 9.03)	N...TnSNTNpkNNSLNSTTKNT.INNNTVT
  354-  378 (28.14/10.18)	P...T.SNPT..AAVASTTATATTKKSTIST
  379-  405 (26.33/ 8.92)	NeksT.TLPN..ASTISTLSPIAPI.RTVGT
  442-  464 (26.18/ 8.82)	D...I.SVGN..SNTLSPLSLAPTTN.GV.P
  488-  509 (29.73/11.28)	N...P.SL.....TIFNASGLPTTANKNSVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.14|      12|      15|     132|     143|       2
---------------------------------------------------------------------------
  132-  143 (19.87/13.57)	NVGSNSKGLLVE
  150-  161 (19.27/12.90)	NSVTESSDLLIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.51|      19|      48|     467|     485|       3
---------------------------------------------------------------------------
  429-  478 (20.42/ 7.96)	AANSLTTtditnydisvgnsntlsplslapttngvpasPFLFNPFSNPIT
  479-  523 (18.09/ 6.14)	AANAVTT.....ninpsltifnasglpttanknsvtpiPTILNPNINSTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.23|      35|      41|     176|     215|       5
---------------------------------------------------------------------------
  176-  215 (47.08/42.61)	KIELrrpDNGYDY..TTVGLSQSKEEdLLkDIN....NDISKTI.VP
  218-  259 (47.15/25.82)	KMEI...DNSNDTlnTAITVHSSSNE.ML.NINspysNNQSSVIeTP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13792 with Med20 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SLNTNINKNINTNTNSNTNPKNNSLNSTTKNTINNNTVTTIPTSNPTAAVASTTATATTKKSTISTNEKSTTLPNASTI
2) YVNADSSTTVDSLATTSNNSSSLNTSLLNA
313
277
391
306










Molecular Recognition Features






MoRF SequenceStartStop




NANANA