<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13771

Description Uncharacterized protein
SequenceMQVNQQQAIAPDDWRATFSSDERAKLIKNLAVHLKMLSPNLPQEQIIKVATTFESFIFTKMATKNDYIRAYGKKFYQIKSQIQAARANNGSGGAQMAAGDSVNLNAGNEFTASPQVAHTGLPNQSSPQQQQATLQNQAQAVGATPQTAAQQQNLQALANQAQLNIQAHASPQQAQANLQSPRVNPMNLNAAGGLQQQARPAVNPQGRPLQANNVSNMARQNALASMLKNINPNNLSPAQIALLKQRLAAGQFNPAGQAAQTQIPGVNQNPVNVSADNNNLQAQAQAQAQSAQQGQQPSPQLARLGQMGMLNPQTMLKQQMLQRQQKQHIQQLQQAQQQQQQLQQQAQQLQQSVNQGQARPPNAQISLGARSANAAQQPDSRAQNIIDVSSSPNIPAVEVGGGARPMTPLQHGAAVNTVAGISRQLLAGRVKTSPIEGLTDDEKRQIRAQMEQMTPMFQKLDQLLPLFFHLTSSPEATKRLMMMKLLFQDQLDALPKGQYVISPTNLKKLREQFQRYFMFVRTQMAAASNVPQPNAPQLGANASILGQNARPQQPVAPVAASPTDPTATQAADSNPLKHPLTTADLRLPPTKRKSPQIASGVFTGAQGMGSPRPQGANDVGKTPQALAQQRQKLMQAQKLQQAQLASRQLGQMQAPLDQQSVAQTKEIMEEAAPIEINPLDFVANILDNLKSDSEFRISSRTRFHRLLCVALVWAYSTHSLADGQKSMRLTPRRLK
Length735
PositionTail
OrganismBasidiobolus meristosporus CBS 931.73
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Zoopagomycota> Entomophthoromycotina> Basidiobolomycetes> Basidiobolales> Basidiobolaceae> Basidiobolus.
Aromaticity0.04
Grand average of hydropathy-0.585
Instability index57.83
Isoelectric point10.44
Molecular weight79921.64
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13771
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     775.60|     171|     186|       1|     182|       1
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    1-  180 (272.85/100.86)	.....MQVN.....QQQ...A....IAPD........DWRATFSSDERAKLI......K..NLAVHLKMLSP.NLPQ...............EQIIKVATTFESFIFTKMATKNDyiraygkkfyqIKSQIQAA..R.ANNGSGGAQ.MAA...G...DSVNLNA.G..NEFTASPQVAHTGLPNQSSPQQQQAT..LQNQAQAVGATPQTAAQQ.QNL.QALA.NQAQLNIQAHASPQQA..........QANLQS
  181-  344 (187.70/59.42)	PRvnpMNLNaagglQQQarpA....VNPQ........G.RP.LQANNVSNMA......RqnALASMLKNINPnNLSP...............AQI...A.....L.....................LKQRLAAG..Q.FNPAGQAAQtQIP...GvnqNPVNVSAdN..NNLQAQAQ...A..QAQSAQQGQQPSpqLARLGQMGMLNPQTMLKQ.QML.Q....RQQKQHIQQLQQAQQQ..........QQQLQQ
  353-  493 (148.81/45.51)	.......VN.....QGQ...A....RPPNaqislgarSANAAQQPDSRAQNI......I..DVSS.....SP.NIP..................AVEV...........................................G.GGARpMTPlqhG...AAVNTVA.GisRQLLAG.RVKTSPIEGLTDDEKRQI......RAQMEQMTPM........F.QKLD.QLLPLFFHLTSSPEATkrlmmmkllfQDQLDA
  495-  654 (166.24/51.74)	PK...................gqyvISPT........NLKKLREQFQR....yfmfvrT..QMAAASNVPQP.NAPQlganasilgqnarpqQPVAPVAASPTDPTATQAADSNP...........LKHPLTTAdlRlPPTKRKSPQ.IAS...G.....V..................FTGAQGMGSPRPQGA.....ND...VGKTPQALAQQrQKLmQAQKlQQAQL.....ASRQLG..........Q..MQA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13771 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGQFNPAGQAAQTQIPGVNQNPVNVSADNNNLQAQAQAQAQSAQQGQQPSPQLARLGQMGMLNPQTMLKQQMLQRQQKQHIQQLQQAQQQQQQLQQQAQQLQQSVNQGQARPPNAQISLGARSANAAQQPDSRAQNIIDVSSSPNIPAVEVGGGARPMTPLQHGAA
2) ANNGSGGAQMAAGDSVNLNAGNEFTASPQVAHTGLPNQSSPQQQQATLQNQAQAVGATPQTAAQQQNLQALANQAQLNIQAHASPQQAQANLQSPRVNPMNLNAAGGLQQQARPAVNPQGRPLQANNVSNMARQNALASMLKNIN
3) ASNVPQPNAPQLGANASILGQNARPQQPVAPVAASPTDPTATQAADSNPLKHPLTTADLRLPPTKRKSPQIASGVFTGAQGMGSPRPQGANDVGKTPQALAQQRQKLMQAQKLQQAQLASRQLGQMQAPLDQQSVAQTKEIME
249
87
527
414
231
669










Molecular Recognition Features






MoRF SequenceStartStop




NANANA