<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13770

Description Uncharacterized protein
SequenceMAGKYPGHHNSRLYRPNNGNSGSSYSSLQNGTPGAPNLSSKQSQPPYGSVKSTSYHQHLGGHSSNYGTGGGYQSNASTNTAPSPNQSHPSSQKPNVTTLKKYTLLPPPKIATLHKTSDLGYPDFFPQRADQEEDQLTDANVRGGFQDRMAIQNESFSAHDMIFDRLQDSRVRDELSAFITDVLGRKQKERLITSPSIFRPPTRVSLNEQLKDQWIQDLVGGAVPLRKLLKSIPHGLKGDKLIETLVTNQTPLLRAGWVIKAIGLSELQFQRSKAPLTIQQYAVEWTNTFTQYMYRQLFELSTQNRATSSTSSINKPWLSEEARNRWTNKWLYSIKLAKWQYAEGILDQRHFLKWALDQFGNANFEQSAVLLPLITQLISEYERSRTLLRLLIDHLLGKIDQLRKHAITMKVWRHGYLAKELVRFIQALFLSSSDAFVHPVFWRQHRRTLRDVLVDDPLVAPIPGMRETNHFELEMTVRMKDLFEVIDRRNAVFTQAAETEKAVRSSTRTYAGGDLRFLSLFRVGLDSDFDALASKYFGPWENIQSTPNEFERKVFTLCNWVITNLRPGSHKIYIVLTLLFRMKEKYDQGVADEGQTSYSDLLQEVLLKFLDTYACTPANDGEEYDAIAWLYGEFAKADLFSYSRYLQRLISRGDLLVSKRAEEKTLRHLKYLQIFPLAHSSTALLNQRRIALYGVDGREEHETAHLELIKSKIRAKLPYISAACEDHLEDVDPKVLSSVQKLTSPIVDNYARDFHLQLPIDGGLVELLKSSTRFVQIYITQQWLLEMVRAYVVKDVEIGLDNWRVITSPGTSLLNPRQFSTIARIIGIVQDYYGIIELALWTLEHSMEDSVISVVIELIKQYQAYWISMGIRDQIINALLEKHNESKAKRSVNKALLVYLQALVHERTGFDPNTKKQLNQDLAEYNEATLAINSTYPATVFPPRVEELLSFANEVNPTTASTAAAVASTLWHKYHTTDGWLTKIFDSMVTLLTEAQSTSPDFLDFRRKLTRFSELLRELTPREASNPIIEWLRAPSHSNSNKKNLHMLESPSHEWFTLFLTILVTEGCVSISALVDEIGTNILEKVIQSLLKSKHKQLDSGITVLCKNILALLGLILGQPENNGQEMLLITIQEMNAIQSCLSREFQTTRSLKLLFHLVYQVCVLESGLPLNHDLSPALQSLRKELASVDWFRRICLADISEVYRLYMTRSDLSEKKFKRAEKQAVASKLLDTYLILFNEIPDRTSQSSLSTSALLAHCRDLFAKLNTHTMDRCRVELWLLLDKVMEENEAEFDTGRIPNENTRKEETLSQLAHLLFEEVPSYKDLDAAMMKHLFVGVRNDVAAELLKRAKKILVGREGKPFPENILMFHEMDISFAAKAKVVNGFNEILGVLLTSLTEDTADVKIDFLKALLDQVAKFLPYLKTFQVMESCNISFLEAENALHLNSNVLHAAISSVRSEENKEISTGRRVLIEDIRISLLIRLRLFTNVLPILWKNPAQCDVGQWITTLVQLLSNCVVHGNGTCPQTFEFVLDLVAVCIDEIPKEFKNSILQNLRAMWTELVLPSVFGSRLKRIFPFQIYNIYENQLKSNPTLKPWEFLEDSSGAETEGNLNDTPIPLTWFNAKRIRVAEPSHYPIVETTFWN
Length1644
PositionKinase
OrganismBasidiobolus meristosporus CBS 931.73
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Zoopagomycota> Entomophthoromycotina> Basidiobolomycetes> Basidiobolales> Basidiobolaceae> Basidiobolus.
Aromaticity0.09
Grand average of hydropathy-0.252
Instability index42.04
Isoelectric point7.04
Molecular weight187472.40
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13770
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.81|      32|      57|     707|     740|       1
---------------------------------------------------------------------------
  707-  740 (48.25/32.31)	ELIKSKIRAKLPYISAacEDHLEDVDPKVLSSVQ
  766-  797 (54.56/30.18)	ELLKSSTRFVQIYITQ..QWLLEMVRAYVVKDVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.96|      14|      61|     385|     404|       2
---------------------------------------------------------------------------
  370-  383 (23.19/10.56)	LLP.LITQLISEYER
  387-  401 (18.77/12.54)	LLRlLIDHLLGKIDQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.83|      27|      62|     933|     961|       3
---------------------------------------------------------------------------
  933-  961 (43.56/32.70)	NSTYPAtvFPPRVEELLSFAN...EVNPTTAS
  996- 1025 (42.26/25.42)	QSTSPD..FLDFRRKLTRFSEllrELTPREAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.16|      33|      63|    1338|    1376|       4
---------------------------------------------------------------------------
 1338- 1376 (49.95/45.76)	VRNDVAAELLKRAKKILvgregkPFPENILMFHEMDISF
 1404- 1436 (56.21/36.90)	VKIDFLKALLDQVAKFL......PYLKTFQVMESCNISF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.40|      44|      61|     579|     632|       6
---------------------------------------------------------------------------
  579-  632 (59.51/73.23)	LFRMKeKYDQGVADEGqtsysDLL......QEVL..LKFLDTYactP.ANDGE...EYDAIAwLYG
  639-  694 (57.89/38.50)	LFSYS.RYLQRLISRG.....DLLvskraeEKTLrhLKYLQIF...PlAHSSTallNQRRIA.LYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.28|      44|     240|     174|     227|      14
---------------------------------------------------------------------------
  175-  219 (71.75/63.09)	LSAFITDVLGRKQKErLITSPSIFRPPTRVSLNEQLK..................DQWIQDLV
 1450- 1511 (61.54/29.55)	LHAAISSVRSEENKE.ISTGRRVLIEDIRISLLIRLRlftnvlpilwknpaqcdvGQWITTLV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13770 with Med12 domain of Kingdom Fungi
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