<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13765

Description SURF5-domain-containing protein
SequenceMSFLPVASSKEKKNKFVQNEEEYNKRLDSEIDQLIDSFHHIIKASMIGEHDKYKIFQEEYLINCMSSNIIRSAQSLLSLVSELKQSILLYDYKSLNSGILSRIETIEQEKLTISNILMSLCSDIRNTLKELEDVQYSSISFDMNEKNEEKNEEKIEEKSSRKTVETSDIKNEEKTK
Length176
PositionHead
OrganismAnaeromyces robustus
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Neocallimastigomycetes> Neocallimastigales> Neocallimastigaceae> Anaeromyces.
Aromaticity0.06
Grand average of hydropathy-0.690
Instability index78.97
Isoelectric point5.08
Molecular weight20528.98
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13765
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.02|      22|      22|      74|      95|       1
---------------------------------------------------------------------------
   74-   95 (33.47/17.18)	QS.LLSLVSELKQSI.LLYD..YKSL
   96-  113 (18.91/ 7.14)	NSgILSRIETIEQEK.L.......TI
  115-  139 (25.65/11.79)	NI.LMSLCSDIRNTLkELEDvqYSSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.99|      17|      35|       7|      23|       2
---------------------------------------------------------------------------
    7-   23 (28.32/14.80)	ASSKEKKNKFVQNEEEY
   44-   60 (30.67/16.47)	ASMIGEHDKYKIFQEEY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.72|      10|      18|     145|     154|       3
---------------------------------------------------------------------------
  145-  154 (17.41/ 8.43)	EKNEEKNEEK
  165-  174 (17.30/ 8.35)	ETSDIKNEEK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13765 with Med22 domain of Kingdom Fungi
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