<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13763

Description Uncharacterized protein
SequenceMEMQNNLTVKLLEESSLDAKELEAAKIKLTQLNDSLNSFLTLHPQTPWPLILDKFNILITRYNQLLQEVSCKFLKECVIHPDSLPEIDPDSLPRFLLRTKFIPEIEEMEKNLIVSIAGDNNQFNWIDETKMNNEFIKWKTQISQHDEIAEKAIDVFELNQRNYDFKRRIPLNEKRKRLRPELPRRRKRHSSILKKKLLSSQSKSENSPLSQSLTISPSNLGTEIEDSKSMMSETVTDLGTVTDDDSTTSSVMTESTNIVEEKDSDSDSDSDDMNSKTTSKINSGDEDSIITSATGTTNLTSSTYLTLNTSNLGSSSFGSLYNIKRVPRSSTLKNEVDYENENENDNESDYEDTYNYDESSESSSESEQENEKEKEKEKEKENEMKKDKRNKEKAKDNKKSSNTMIPELNSQEGILEKMIYWLERGGEFK
Length429
PositionHead
OrganismAnaeromyces robustus
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Neocallimastigomycetes> Neocallimastigales> Neocallimastigaceae> Anaeromyces.
Aromaticity0.06
Grand average of hydropathy-0.993
Instability index58.85
Isoelectric point4.84
Molecular weight49317.11
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13763
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     216.55|      71|      96|     210|     280|       2
---------------------------------------------------------------------------
  210-  280 (114.45/50.60)	SQSLTISPSNLGT....EIEDSKSMM.SETV.TDLGTVTDDDSTTSSVMTESTNIVEEKDSDSDSDSDDMNSKTTSK
  302-  378 (102.10/44.42)	STYLTLNTSNLGSssfgSLYNIKRVPrSSTLkNEVDYENENENDNESDYEDTYNYDESSESSSESEQENEKEKEKEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.73|      31|      53|      10|      40|       3
---------------------------------------------------------------------------
   10-   40 (48.81/30.08)	KLLEESSLD.AKELEAAKIKLTQLN.DSLNSFL
   64-   96 (46.92/28.66)	QLLQEVSCKfLKECVIHPDSLPEIDpDSLPRFL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13763 with Med8 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KSENSPLSQSLTISPSNLGTEIEDSKSMMSETVTDLGTVTDDDSTTSSVMTESTNIVEEKDSDSDSDSDDMNSKTTSKINSGDEDSIITSATGTTNLTSSTYLTLNTSNL
2) SFGSLYNIKRVPRSSTLKNEVDYENENENDNESDYEDTYNYDESSESSSESEQENEKEKEKEKEKENEMKKDKRNKEKAKDNKKSSNTMIPELNSQEGILEK
203
316
312
417










Molecular Recognition Features






MoRF SequenceStartStop




1) HSSILKKKLLS
2) SFGSLYNIKRVP
3) TMIPELNSQEGILEKMIYWLERGGEFK
189
316
403
199
327
429