<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13757
Description |
Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MAESSAKRIKLAIEVADENVIKDITDDGEEILEQELTNSEKLDRITSRINFEALLDSKTDNNKDLEKANNENQNIEKINTEPNNNQTPAQPLERIKFNLYFAQQEIELSLDIINRLIMTSTANGRKRVHLENNRIQAAAKSKGILNQPNAQTPQTPGTQPRKTESNIRLSYINKPKLQLKQQIEECQLKLSAKKEHLRYASKVLLEEHENLLKLLDISQAFYNEQAFTLRRNNWVIQSKNRGGMFQKNQKLLYIDYSYKHAGSKFKEMGIAQIKQNPHLTSVNNKINNINNNINNNINNININNTIINNINNINNISNINNNNNNSNNNNINNNNKDEEDSISNEQKIKLLLPHKKKKVVTVEIASLSSPSTHKDVWVTWDTEDIDNDILRQLLESQITIFHNELYNRIINDAQNSYLERKVKFSENMITIPLNNDKVLIFKIHTKTDDKESADIKHLSHKELSEAFLELFLQQKLRNCHKKNIQKNNFFISNIVETQDQNINILSPSVSTISKSNNNFNNNNNNINNKTDAILNKKSETEKSKSNILKDNFVEQTYELILYKECIEYIKKNLDHFIKTLITGKIPVTVRFEKIFNDKAENTLENETQILINFFNNYPVKFGIKFPTKVVFYLNRQQDKNGIINCHEVKNGFIKFLLQELKVICLKIICQEAKNSGITGNEKWEVDDIVGKYLKGIINFQDSIGVFEVITHSNIEPLELSFDIKCQFNKKTTNHTIKLNNNNNNNNRTKDNLNQIKSGINYFPLFINEIQKIFVYDIITCI |
Length | 781 |
Position | Head |
Organism | Anaeromyces robustus |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Fungi incertae sedis> Chytridiomycota>
Chytridiomycota incertae sedis> Neocallimastigomycetes> Neocallimastigales>
Neocallimastigaceae> Anaeromyces.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.690 |
Instability index | 42.09 |
Isoelectric point | 8.74 |
Molecular weight | 90474.36 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP13757
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 162.34| 28| 28| 282| 309| 1
---------------------------------------------------------------------------
270- 296 (45.49/12.82) IAQIK.QNPHLTSVN..NKINNINNNINNN
297- 325 (45.43/12.79) INNININNTIINNINniNNISNINNN.NNN
473- 498 (31.02/ 6.54) ..QQKLRNCHKKNIQ..KNNFFISNIVETQ
499- 525 (40.40/10.61) DQNINILSPSVSTIS..KSNNNFNNN.NNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 35.53| 12| 21| 50| 62| 2
---------------------------------------------------------------------------
50- 62 (14.64/ 7.26) NFEAlLDSKTDNN
74- 85 (20.89/ 7.68) NIEK.INTEPNNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 61.91| 22| 27| 605| 631| 4
---------------------------------------------------------------------------
605- 630 (35.89/30.06) NETQ....ILinffNNYPVKFG.IKF...PTKVV
634- 663 (26.02/ 8.27) NRQQdkngII....NCHEVKNGfIKFllqELKVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 116.28| 27| 30| 145| 174| 8
---------------------------------------------------------------------------
86- 115 (22.57/ 9.11) ......QTPAQPLERIKfnlyfaQQEIELSLDIINR
118- 136 (20.42/ 8.37) M......TSTANGRKRV......HLENN.RIQ....
145- 174 (40.78/32.93) LNQpnaQTPQTPGTQPR......KTESNIRLSYINK
179- 202 (32.51/17.76) LKQ......QIEECQLK......LSAKKEHLRYASK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 58.10| 20| 22| 385| 405| 10
---------------------------------------------------------------------------
385- 404 (35.21/20.25) IDNDILRQLLESQ.......ITI.FHNE
409- 436 (22.89/ 6.90) IINDAQNSYLERKvkfsenmITIpLNND
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