Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MNSFMLEDNSVTNIFSLKGVSKIKWKRYYYIYKNDVDRNISNSFLPLESGLLKDPLISSYLHLVSNGVLCIWINGQYNNDDEEGKPTKLFSKSNNLKLNDLMDISKSNDVKKNLISDSKSICKELWIFQYDNEPDIDYKEVEQLIELENGEFNFDTLNTLYVQDSNYEFIEYHLFIKAIYNLLERNFYKHGIFRLGDHFVFLELPKNNSIFMMDTTDNSQSLLSCQIIFTYTSSNLLLQPVIRQHQFLRPLDIHDINKANQNLKNIKNNKNDSDNDNKTKSNIGINQTSVNCHSNILVLLSPHGIPAYLYSSEIQYSYEIDFILSEWSKCFGIPINKLYYHDSNYKIPLVVTVYIPELDCYINYPSKCIFIVDSKNSYNISRKLCYNPRIYHQFNEFIWRDQSIQDDTLIFSEFNNSIKYKNNDIINQVDNINSNKSSNNLVDIKLEINDEEIKANNSRTKNITKNIKDIDFFNFINPEKKILTELVKEEKTINEIQAEIARNINNNNNNNNINNNNNNNNNNNNNNNNNNNNINSNSNSKNNNNLNSSNNNNKVNSPYNNSQIINLKNNKLPPNVINTPNKATKVKEEKKRKNQTDNKKTKKEKKETTEVKIEKPITVENNTQVEDNYGLPMFNDNNFDDFGDWETGIEITDKDFDFFDDKPNASNDFGMDDFFSSSIPDKDSNKQSSLNFSSQDTLITDIKMEEQIETKNSLPSTPATQDVGTPLSINGNKTINSIQNSPDPASMSPINNMMSPQVTIPNDLIKHSPSTISSPLVNNVSQNSVSSLSNEIKSSNNISINTNVNANIKSENIIINNNNNNNNNNDNNNNNNNNNDNDSNNNDNNNNNNNNNNDNDNNNYNNNNNKNNDDDKNNNGINNDNSKDENEISLSKDINNENNNENNIDSNNINNINNNDNNNSSVINETSTNDDDITIPHEWEFKNSNQTYIENLIEKYHKGKWSYEPKLSNYITSYKRKRISKKNLYRIILSKKIKYREDIMINDKSKKDSEIKKEDMKKKKIKEEDINGKLNKRIKIEDINETETVNENKENENANINNHSLTDVNNNIINIDFGSAWKMLNITKYNIINDIIEKNLTELSLEQNLSYNSIIINNNNNYRNELDKISQRIFIDQYTGSLSSWNKSVSNSLSAISLTKENELYDEYIIPSLASKALNQLQIIFEDLFGNDNESKFNSFIEGPLTIKQLYDSEHSQHAKYGKYQVKKKTKKNIDYVLEKLSSPDIIVGNNNEWIKLNSTSLRFWDKIGVLPYSGKKNISWFALCPTMKELNGEPNMNSDLINIVREWFQNLSYIYESSNFGSHTSGNLNSINGIIPCLLDEHNNISNIDNILNSYERAISYFASMMGENIHGIIEEGEATTMSDIDECLNNDQRYIVLYLLNPFSSSDKSFINDNQVKLINYKLCQIFVNSFLYKLSLSTRLSIEKLKSKIILQIIPLDLIANSCSFDGYIIIGLKDLVFTLYSKCRKLLQKNININNTEYIIPNNLYQPAFILSQIAIPIPHFTFKRFSRKNQLKNRINIMEPDRILHISYVYVDDRIVACMTDQVGELFDIIIVDDNNERLISISQSDYDKYTKQQILFIKIWEKAMKLILFGCNFYWRIAIIKIGHVLQNEINDWEFISSKYLEKLQHHYNHPSLKVINNLNEQIYSVSILGIYKNSSFQIFKEKIKSNSSSLNPLTRKDSERISSSSLQNNQKSASNNSLKNDININEFNDITINLSNSCYTYIHSVQRSPSFPSNPEIIWPLISSKYDNMKDNNLALPLSIGWMIYTPSMESKQVGINTKNFEILLLSHQHSRTLKSNKTCFPTWNPILPTTPMSMPNSPSSSSTSVSKGINGNTNPPTLTKSNSISMKDINSPLSMMSSSSTLSLNNNNNGSSIPFNVILSDLIKQYFSLSFLEIHWSNLINTANGCASDDLRLPIHISSANRISKILKGFHF |
Length | 1956 |
Position | Kinase |
Organism | Anaeromyces robustus |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Neocallimastigomycetes> Neocallimastigales> Neocallimastigaceae> Anaeromyces. |
Aromaticity | 0.09 |
Grand average of hydropathy | -0.700 |
Instability index | 40.13 |
Isoelectric point | 5.78 |
Molecular weight | 225031.55 |
Publications |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP13756 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 1229.46| 296| 299| 407| 705| 1 --------------------------------------------------------------------------- 54- 308 (223.98/48.63) ...............................................................................................................DPLISSYLhlvSNGVlciwingQY..NNDDE.....EGKPTKLFS..KS.........NN.....LKLNDlMDISK............................SNDVKKNLisdSKSIcKELWI...FQYDNePDidyK.EV.EQLIELENgefnfdTLNTlyVQDSNYEFIEYHLFIKAI..YNLLERNfykhgifrlgDHFVFLELPKNNSIFMMDTTDNSQSLLSC....QIIFTYTSSnlllQPVIRQHQFLRPLDIHDINKANQnLKNIKNNKNDSDNdNKTKSNiGINQTSVNCHSNILV.....LLSPHGIPAY 312- 634 (451.98/108.08) SEIQYSyeiDFilSEWSKcfGI...PI..NK.L.YYHD....SN.YKIPLVVTVYIPELDCY....INYPSKCIFIVDSKNSynisrklcynpriyhqfnefiwrdqsiqdDTLIFSEF...NNSI.......KY..KNNDI.....INQVDNINSNKSS.........NNLVDIKLEIND.EEIKA............................NNSRTKNI...TKNI.KDIDF...FNFIN.PE...K.KILTELVKEEK......TINE..IQAEIARNINNNNNNNNI..NNNNNNN..........NNNNNNNNNNNNNINSNSNSKNNNNLNSSNNNNKVNSPYNNS....QIINLKNNKLPPNVINTPNKATK.VKEEKKRKNQTDN.KKTKKE.KKETTEVKIEKPITVENNTqVEDNYGLPMF 635- 909 (386.95/92.34) NDNNFD...DF..GDWET..GI...EIT.DKDFDFFDDkpNASNDFGMDDFFSSSIPDKDSNKQSSLNFSSQDTLITDIKME............................eQI....ET...KNSL.......PStpATQDVgtplsINGNKTINSIQNSpdpasmspiNNMMSPQVTIPN.DLIKH............................SPS..........TI.SS.PL...VN..N.VS...Q.NSVSSLSNEIK......SSNN..I..SINTNVNANIKSENIiiNNNNNNN..........NNNDNNNNNNNNNDNDSNNNDNNNN.NNNNNNDNDNNNYNN.....N..NNKNNDD.....D.KN............NNGINN.DNSKDE.....NEISLSKDINNENNN..ENNIDSNNI 915- 1121 (166.55/34.20) NDNNNS...SV..IN.ET..STnddDITiPHEWEF.....KNSNQTYIENLIEKYHKGKWSYEPKLSNY......ITSYK.R........................kriskKNLYRIIL...SKKI.......KY..REDIM.....INDKSKKDSEIKK.........EDMKKKK..IKE.EDINGklnkrikiedinetetvnenkenenaniNNHSLTDV...NNNI.INIDFgsaWKMLN.IT...KyNIINDII..EK......NLTE..LSLEQNLSYNSIIINNNN..NYRNE..................................................................................................................................... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 217.82| 44| 44| 1749| 1792| 2 --------------------------------------------------------------------------- 1708- 1746 (56.23/23.66) SLQNNQ.KSAS........NNSLKNDININEF.......NDITINLSNS.CY.TYIH 1747- 1790 (77.09/35.84) SVQRSP.SFPS........NPEIIWPLISSKYD.N.MKDNNLALPLSIG.WM.IYTP 1791- 1829 (32.30/ 9.69) SME.......SkqvgintkNFEIL..LLSHQHS.RtLKSNKTCFP....tW....NP 1830- 1876 (52.19/21.30) ILPTTPmSMPN........SPSSSSTSVSKGINgN.TNPPTLTKSNSIS.MKdINSP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 152.85| 41| 44| 1452| 1495| 3 --------------------------------------------------------------------------- 1452- 1481 (41.76/19.12) ...............IIPLDLIAN.SCSF.DGYIIIGLKDLVFTLYS 1484- 1527 (57.71/38.04) RKLLQKNiNINNteyIIPNNLYQP.AFIL.SQ.IAIPIPHFTFKRFS 1528- 1568 (53.39/24.55) RKNQLKN.RINI...MEP.DRILHiSYVYvDDRIVACMTDQVGELF. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 224.46| 48| 48| 1295| 1342| 4 --------------------------------------------------------------------------- 1174- 1217 (40.90/17.39) .......LNQLQIIFE.DLFGNDNESKFN.....................................SfIEGplTIKQLYDsEHSQHAKY 1220- 1297 (41.67/17.88) YQVKKKTKKNIDYVLEKLSSPDIIVGNNNewiklnstslrfwdkigvlpysgkkniswfalcptmkE.LNG..........EPNMNSDL 1298- 1345 (83.77/44.72) INIVREWFQNLSYIYESSNFGSHTSGNLN.....................................S.ING..IIPCLLD.EHNNISNI 1346- 1382 (58.12/28.37) DNILNSYERAISY......FASMMGEN.........................................IHG..IIE..EG.EATTMSDI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 41.17| 12| 15| 1655| 1666| 5 --------------------------------------------------------------------------- 1655- 1666 (20.07/11.09) LKVINNLNEQIY 1671- 1682 (21.10/12.19) LGIYKNSSFQIF --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GIEITDKDFDFFD 2) WKRYYYIYK | 648 25 | 660 33 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab