<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13754

Description Uncharacterized protein
SequenceMDMIIKNIKSLANNLNNIIDSDNNFNDYNNISKIINNNINNSLETYCIFFIKELSIVTGIMSAMENRIINIFGGKQLDHWSVVCKLYKSVIFPRVPIELIKNSGRGESMYLLSFSSNPNHVYSIIDEKVIMEADSSFVELIAKIKNIWTVRQIARIDGYNFEIGDYNVRYGKLNVGSHSKGLIIELEHTKSTSVTDSSNLLIEFINYLIPGELLKNYKLELKRPDNGYDYTTVGLSQTKENDDLSKKYNKESSIIPNVKMEIDIPNNTNQTNISSNEILTSSSPYSNTTFNQSSVVETPGSLGSTEISNIVNETNKYVTTDSSMTIDTIMTTGTSTTPGTTSTTTTNNNSNSLNTPSSINNTSTIQSSITTTTDNLTTTNTDAAMTNNNNSLSTNSNSNNNNNNNNNNNIETASNTLNSKGLLTNTIGSATVNNNINTLKPNITTANNTTITTTTTTTTTTTAATTATTATTSTTATATLSASINSTAITPSIAPIPSVATNPLVTSNPLANISTLASLNLNLNPLALNAAAAAAAATATDITNYDINIRPNVNNLNTFSTLNKTATASTTAVPAVPAAPFLFNSLTNPSLNPFNPTNLSANTKSPLPTLLNINTPTGTATNSNPTTPTTIPNVFSKAKQNALLSKIQKRKEPLLHQPLSSSQISSFIQSSALSTINTSTIPTLKIINSGINISSPLPPPSGGQSLYLTNHQLNSPNYNNNNNNNNNNNNDNDNDNNNNLNSITILQEGKEIKEVKERGRYNFIFTSKHTAYQYINLLRNEKIL
Length784
PositionHead
OrganismAnaeromyces robustus
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Neocallimastigomycetes> Neocallimastigales> Neocallimastigaceae> Anaeromyces.
Aromaticity0.05
Grand average of hydropathy-0.408
Instability index32.63
Isoelectric point6.43
Molecular weight84882.18
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13754
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     136.62|      37|      38|     325|     361|       1
---------------------------------------------------------------------------
  336-  374 (59.40/14.73)	TTPGTTSTTTTNNNSNSL..NTPSSINN....tsTIQSSITT....TTD
  377-  423 (37.90/ 6.54)	TTTNTDAAMTNNNNSLST..NSNSNNNNnnnnnnNIETASNTlnskGLL
  424-  460 (39.32/ 7.08)	T..NTIGSATVNNNINTLkpNITTANNT......TITTTTTT....TTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.08|      17|      19|     254|     270|       2
---------------------------------------------------------------------------
  213-  229 (24.83/10.92)	LLKNYKLELKRPDNGYD
  254-  270 (31.25/15.80)	IIPNVKMEIDIPNNTNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.32|      20|      21|     464|     483|       5
---------------------------------------------------------------------------
  547-  567 (21.85/ 6.53)	INIRPNVNNlNTFSTLNKTAT
  595-  612 (26.51/10.06)	NPTNLSANT.K..SPLPTLLN
  613-  630 (23.96/ 8.13)	INTPTGTAT.NSNPTTPTT..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.93|      20|      21|     464|     483|       6
---------------------------------------------------------------------------
  464-  483 (31.52/14.77)	ATTATTATTSTTATATLSAS
  488-  507 (32.41/15.41)	AITPSIAPIPSVATNPLVTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.81|      15|      15|     710|     724|       7
---------------------------------------------------------------------------
  710-  724 (30.46/10.97)	NHQLNSPNYNNNNNN
  727-  741 (29.34/10.27)	NNNNDNDNDNNNNLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.95|      20|     105|     570|     594|       9
---------------------------------------------------------------------------
  570-  590 (30.09/24.58)	TTAVPAVPAAPfLFNS.......LTNPS
  675-  701 (26.86/ 7.67)	TINTSTIPTLK.IINSginisspLPPPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13754 with Med20 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PNVKMEIDIPNNTNQTNISSNEILTSSSPYSNTTFNQSSVVETPGSLGSTEISNIVNETNKYVTTDSSMTIDTIMTTGTSTTPGTTSTTTTNNNSNSLNTPSSINNTSTIQSSITTTTDNLTTTNTDAAMTNNNNSLSTNSNSNNNNNNNNNNNIETASNTLNSKGLLTNTIGSATVNNNINTLKPNITTANNTTITTTTTTTTTTTAATTATTATT
2) PPPSGGQSLYLTNHQLNSPNYNNNNNNNNNNNNDNDNDNNNNLNSITILQEG
3) SPLPTLLNINTPTGTATNSNPTTPTTIPNVF
256
698
605
472
749
635










Molecular Recognition Features






MoRF SequenceStartStop




NANANA