<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13748

Description Mediator of RNA polymerase II transcription subunit 8
SequenceMAAGFSDTNIAELETLRGQLQQLQEQVNRNHAQLLQQMVVAPQKQLQSDHELQILSVLLRTKLAPEIERAEEQIKEQMEEEARTDQQQMAFGGQPDGAGNAKYWQAKTEVHDALALTAEVAFKELRKRHSNTAGSTGHGMDVDEAVKEEKAAVALEDVLAFVSSGTRA
Length168
PositionHead
OrganismLinderina pennispora
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Zoopagomycota> Kickxellomycotina> Kickxellomycetes> Kickxellales> Kickxellaceae> Linderina.
Aromaticity0.04
Grand average of hydropathy-0.581
Instability index56.72
Isoelectric point4.96
Molecular weight18562.52
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13748
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.27|      13|      50|      21|      43|       1
---------------------------------------------------------------------------
   26-   40 (17.52/13.57)	QVNRNHAqlLQQMVV
   45-   57 (19.75/ 8.68)	QLQSDHE..LQILSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.25|      23|      44|      92|     116|       3
---------------------------------------------------------------------------
   92-  116 (36.56/34.47)	GGQPDGAgnAKYWQAKTEVHDALAL
  139-  161 (36.69/26.45)	GMDVDEA..VKEEKAAVALEDVLAF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13748 with Med8 domain of Kingdom Fungi
Unable to open file!