<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13746

Description Uncharacterized protein
SequenceMLDVVSQQHRLFHDLCREHAIDTATLEAHSTTTVKVEPHSSASDDVSATVVIKAEPLHDAAGLSHQHSAPNHDDDTDDFDFNSFHDLMDAELMSVNELDKLWTNSNPTQSDSSSKIDSASRALSVAGGFDADASGTHTGGQQWRGADSADGTNGTLDDELSSKLTQKLLALSTGSVANGGPAAGEVREQDSRAVTADGEKCSDSQQAVPAAAAAVAAAAPELPTDIKKDNNSVQQQPAAATATTVDFQPDDAELLSVSKSMIDTEAALSLDAAEGGKGNGDDSASGTGSSSKVILPDPFADISPTAMVATKVPVSPRIVLTIVETVPVYMTVLTTTEPAADCQGKWIVRRHRLLRLVENGYVNASSLLLAGGVASEQERSIVLSLEVGRFKWRRPQSKLYGTWIPLPRARALAATCSLNHRLGPFLNDNLEAYFPAPLPTSFIRHLIMPFFNDPASVLLASQQPGGAQSGSGSAATPSIRAPTSAEIAESGLGIEFQTMVNSAIAGNSASQQSISRTSTFGATARGTPSPSIIQSLATRPGAFSFAGAAKAIFGSDDRHLQSFLQLLSAESPMLGTSLVAEQQNRLQQQLLHQQQQQQQQQQQQQQQKQSAKSGSQSPDEHAAMAVDDDDDNEGDGDGNGDDETTTGTGSVLMTKVGNTPEKSPQSATKTTAASSATVSSVVDQGKSSAAPATTGQGIAAVRVTRSTSAVVAAAAAALAASVEQSADSKESSPALISSVSSTTSAVDSTATPLTSKPLSPSMDAHFPDDLDLDISMVIPGEDSDVDMICCSTPPSPPPPPSSPPALRKLSTTPLKLSSNEIESDGATSSGSRAQTMEAFGFTGTAKANLLLRLRAAAAAKSTGKQQAVAPYLLYRNNSKRAKADNDDDSANAGVRKRARVIRIPRGKPTPKKQQAAVAKTKNPRSSVPDAAVVLRLASAIYNHTLNMAAMAQNQQQQKQQQQQQQQQASHTKASNVASSPRTAGSGRNSPTGVSQRQPQHPQQNRPPPRPVQTQQRPSIQQQPQHQHQQHASRPTSNGAHRPPPMQQRSMAPGQQQQQQQYRPGMVHQPRPMSPGSASQRPLSNARPPMPAPRPQHQMAGTPVRRPIMRPVANGSPPIQGQRPMQRPMPTGANNGTRPTARVPMPQRPGNGYPQQQQQRPQVIRRPPGQQPQQQTGNVHYRPPMPSGAPANRPQHRPMASAVNGHYPSQQHQQVRRPAPASSPQQYSRSTVAATNGPSPPPSRASHGPTTAPSARPHMPPRVASPAQQHSQQTPQRTACVTPRPHYPQQSRAPVQIPLPRGLNQQQQQQQQQHPASTGESLPQRLPAAVNGGGAGVSRAQPMPTTPSAAHIVRPHVKAPVAPVHNPPSTANVLPLTSHHPHHTHKPQMPPPKA
Length1393
PositionTail
OrganismLinderina pennispora
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Zoopagomycota> Kickxellomycotina> Kickxellomycetes> Kickxellales> Kickxellaceae> Linderina.
Aromaticity0.03
Grand average of hydropathy-0.664
Instability index60.16
Isoelectric point9.42
Molecular weight147339.90
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
DNA binding	GO:0003677	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13746
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|    1507.83|     353|     357|     263|     618|       1
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  101-  434 (450.14/133.87)	................................LWTNS..NP..TQS.............DSSSKID.SASRALSVAggfDADASGThtGGQQWRGADSADGTNGTLDDELS.....SklTqkllalST.GSVA.....................NGGPAAGEVR.EQDSR..AVT.ADGEKC...SDsQQAV....PAAAAAVAAAAPELPTD.IKK....DNNSVQQQP.AAATATTVDFQPDDAELL....SVSKSmIDTEAALSLD...AAEG.GKGNGDD.SASGTGS..SSKV.ILPD.PFADISPTAMVATKV.PVSPRIVLTIVETVPVYMTVLTTTEPAADCQGKWIVRRHRLL........RLVENGYVNASSLLLAGGV...ASEQERSIVLSLEVGRFKWRRPQSKLYGTWIPLPRARALAATCS.......LNHRLGPFLND.NLEAYF
  435-  776 (480.49/148.49)	PAPLPTS..FIRHLimP...FFND....PASVLLASQ..QPGGAQS.............GSGSAAT.PSIRAPTSA...EIAESGL..GIEFQTMVNSAIAGNSASQQSIS.....R..T......STFGATA.....................RGTPSPSIIQ.SLATRPGAFSFAGAAKAIfGSD.DRHL....QSFLQLLSAESPMLGTSLVAE....QQNRLQQQL.LHQQQQQQQQQQQQQQQKQSAKSGSQS.PDEHAAMAVDdddDNEGdGDGNGDDeTTTGTGSvlMTKVgNTPE.K....SPQS..ATKTtAASSATVSSVVDQGK...S...SAAPATTGQGIAAVRVTRST........SAV....VAAAAAALAASVeqsADSKESSPALISSVS.....STTSAVDSTATPL.TSKPLSP..S.......MDAH...FPDDlDLDISM
  796- 1140 (429.58/127.67)	PPPPPSSppALRKL.......STT....PLK..LSSNeiESDGATS..............SGSRA..QTMEAFGFT...GTAKANL..LLRLRA...AAAAKSTGKQQAVApyllyR..N......NSKRAKAdndddsanagvrkrarviripRGKPTPKKQQaAVAKTKNPRSSVPDA.AV...............VLRLASA...IYNHTL.........N..MAAM.AQNQQQQKQQQQQQQQQASHTKAS..N.VAS.............S.PRTAGSG.RNSPTGV..SQR...QPQhPQQNRPPPRPVQTQ...QRPSI.....QQQPQHQHQQHASRPTSNGAHRPPPMQQRSMapgqqqqqQQYRPGMVHQPRPM.SPGS...AS..QRP..LSNARPPMPAPRPQHQMAGTPVRRPIMRPVANGSPpiqgqrpMQRPMPTGANN.GTRPTA
 1141- 1322 (147.62/39.18)	RVPMPQR.........PgngYPQQqqqrPQVI....R..RPPGQQPqqqtgnvhyrppmPSGAPANrPQHR.PMAS...AVNGHYP..SQQHQQVRRPAPA...SSPQQYS.....R.........STVAATN.....................GPSPPPS............RASHGPTTA..PSA.RPHMpprvASPAQQHSQQTPQRTACVTPRphypQQSRAPVQIpLPRGLNQQQQQQQQQHP...ASTGESL.P.........................................................................................................................................................................................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.26|      22|      30|    1337|    1362|       2
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 1337- 1362 (35.63/23.54)	SRAQPMPTTPSAAHivrpHVKAPVAP
 1368- 1389 (43.63/20.18)	STANVLPLTSHHPH....HTHKPQMP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.86|      19|      34|      22|      45|       3
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   22-   45 (24.03/22.03)	DTATLeAHSTTTvkveP.HSSASDD
   59-   78 (31.84/15.00)	DAAGL.SHQHSA....PnHDDDTDD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13746 with Med15 domain of Kingdom Fungi
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