<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13720

Description Uncharacterized protein
SequenceMVTILQSNSPEIIPCTPKKSNIYQKHHTNLKSDRTITTNIDTASSSTSNRCLTSLSTGSSKIYYKKNIKNLLAVPSIPTSLPPIDNISNYQNYYHNPHFNTITKRYTSLNSGIKEPTISRDNFLVYPFNTMVSESLNSPNINDNHDIPIDIQSFKDTIGITPPSTTPSTPTTPSSIHLKNIDTLDESFLSVPSSIESKNLLKETPSSNTLLPFSTSSQYTKNKNNCKNTTSIMTTIHHPKINRLLPPSNNTTMNSKKIIKKSLSKGFYENNFDTRFTSPKNTIPNSVIKSKHTLYNGSFNVLSNSNPCLISSKHKALCLQLLVDLRRHSDSGPFLNASENKKECCRERERRKKSKNRKNGVKQNTMLISKMSNTYDNVTLDSCKHSSDLYSIQQQLEEDGYKNIYSVFLDLQQMLLYFYNSCHDHFIHRMGKNIEKFLIEKLEMMPEDFIKELREQCIHHYQYYRRLALSSSTSYPVLPSFLKVITLPTLLDDSFESEEDWMISDHDGLNDAIHDKASFQREEQLKACKKKEREKLCLILGENNSDKLIKKSKGKSIVCKFNDEEKLSSSSSSSSLDRKRKHTQKEDETRLVSWNIILKKIPHSSSQPNDCANPINKKIKTLKYDSVKGKTFAHHPKNKNWIIQLKRNGQSQSFVFSRNLSYRHHHSSNLSSKPFNFILTLPTEIIKNSPWAKFFYHYTAVSPKSLKEEKKERKLLYQTKSKPLIEVKESNVVVESSPHPKSSKNEKMEVSAVLPKKQLEFNSSEMGITQASEGHERKKELNDDMFVDLCSSTSSEFDKKDLMEKEDMECSMKCDFLPPTPPSSSPPSSPMNITEEEVKEMTEREDDDVMALDVKEKVDTTKKEKDGDKEKNKNAEKKSDKTEKKELVKEEQKKPSTEKTESSFNPLEWLESKKDSKSLNYEALNSLKKDQQESLSNFLIHQQINNIIETQLLIDHLNNVNDSTSTHSSLPSLYPLNHFDHFLNNLPNFSDPNNSTNLLSSLMLTNENDLSSTVAALTSANQAFDATNDFIDWEKACSDNLSNGQNIVHSSMLSSLDTTFPSLLPSCSNDSLLSSTSAITENIMNSYVNNYFDDTMLNPLYDIPSTSTSSTAAADLSLFDTNNLTLNHLIPEDINSFVNNTTISSSPSELASYPTHTMDLNPLTTTPPVFLNQNALAFNSIPYSSKLLANPSSFPLMNAKDPLMMGGLNDPVTMALHTLPSNLHYSSPAYSLRNTKLGGISSTPPSTSSNSVYKHHHHINSSNLYITASNIATSLTAASKKMSKKSTAAATTKAATTTESKQSLPKQSKKHTLKTPDVVEDGSVATTTTTTPTTTTATTTATTTTTATTVASTVLIPEGTTKIPATTSDKTFAMPIDDTAKMTTISNKVASTSSTVAIPTVTMTTTVAKPTTTIKDTAAMMTSVVVKPTIAPATIEDTTMVVSTVDKPTSVMEDTTTIKDKTTITTTLMDDVTATQSSLDPASILNLPSNEGKKEEKEENSTNDKLLSSEKSDRGEPILNSLDRVTPTIPSKIIADTMPSLSAPTSDVMLSEVSKEIQENLSFLSNTPSIIENENDTAHNTNDLSIISTDDFLTPPNYSYYDLLLNLNNNCNETLISEMANHESTENMTLDENTNGPVKKEKVFDKGKTGDITEDKSFNESNRVTLPSRKEGSKDAAVKKEVKVEEIKPKPKRIRISLDLSHSNSKKEEEEEEEESEEESFMEQDIIEEEEEEEEEEVNDIMEEDLESEEEEEEETDDYESDEFEMEDDDEIEDSDEDKMEDDEDDEETNLSLMDIKRIKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQHYHQKEVLQTTEIIKTNIKMNSPPIPRIIVHTKKPVKVECDSHEYVNVQQLNFEDHQENIFDIEYLTPEILSKLRKSISSKPKEVKKITSLAAYGTRINSTVDKKEKIINLSKLVIKENKERKMEKKPMISARSKKMRGRSVLKVPVLTESNSSKANSINTPTAVAAVTTNTPVRGKGRPKGHCGRPRKRWPVESPQIPLDHIKSELYNANKENKENKFMVEESGNTLYIKPELQEKSSETIITQVSVTTSSSVEPITVITSTVPSSVITSTRNSHFYSSSPKQCTYCGSTSTPLWRHGPPESPRLCNSCGVKWKRGKILQSQPSGFPWNSISVDKKTEEFRSLMRCITSEKVLKVLGILKTCMTIAMKRQLDRGEGVKIDIRSIDSRAWSQLYRYIKCQ
Length2234
PositionTail
OrganismPiromyces finnis
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Neocallimastigomycetes> Neocallimastigales> Neocallimastigaceae> Piromyces.
Aromaticity0.05
Grand average of hydropathy-0.756
Instability index54.91
Isoelectric point6.10
Molecular weight251480.38
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
sequence-specific DNA binding	GO:0043565	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13720
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.76|      15|      15|    1801|    1815|       1
---------------------------------------------------------------------------
 1801- 1815 (31.52/22.09)	QQQQQQQQQQQQQQQ
 1819- 1833 (31.24/21.83)	QQQQQQQQQQQQQQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.85|      14|      17|    1709|    1725|       2
---------------------------------------------------------------------------
 1709- 1722 (25.60/ 8.64)	EEEEEEESEEESFM
 1729- 1742 (23.25/11.42)	EEEEEEEEEVNDIM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.60|      18|      19|    1403|    1420|       3
---------------------------------------------------------------------------
 1360- 1374 (19.56/ 6.50)	TTKI..PA...TTSDKTFAM.
 1404- 1421 (35.33/17.87)	TTTVAKPT...TTIKDTAAMM
 1422- 1441 (22.71/ 8.77)	TSVVVKPTiapATIEDT.TMV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.61|      16|      17|    1755|    1771|       5
---------------------------------------------------------------------------
 1743- 1756 (19.75/ 7.48)	..EED.LESEEEEE.ET
 1758- 1773 (19.34/ 8.82)	DYESDEFEMEDDDEiE.
 1774- 1789 (29.52/12.10)	DSDEDKMEDDEDDE.ET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.03|      18|      19|    2115|    2133|       6
---------------------------------------------------------------------------
 2014- 2028 (27.15/13.76)	.PK..GHCG.RPRKRWPVE
 2115- 2133 (34.08/23.95)	SPKQCTYCGsTSTPLWRHG
 2137- 2151 (31.79/17.41)	SPRLCNSCG...VK.WKRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.44|      16|      19|    1315|    1333|       7
---------------------------------------------------------------------------
 1318- 1333 (27.28/ 9.11)	VVEDGSVATTTTTTPT
 1451- 1466 (26.16/ 8.25)	VMEDTTTIKDKTTITT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     158.10|      31|      31|    1099|    1129|       8
---------------------------------------------------------------------------
  961-  984 (26.30/ 8.58)	..NDSTS.....THSSL...PSLYPLNHFDhfLN..
 1099- 1129 (53.99/26.05)	PLYDIPS...TSTSSTAAADLSLFDTNNLT..LNHL
 1131- 1163 (46.68/21.43)	P.EDINSfvnNTTISSSPSELASYPTHTMD..LNPL
 1177- 1198 (31.13/11.63)	AFNSIP......YSSKLLANPSSFPLMN........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.26|      30|      31|     242|     271|      10
---------------------------------------------------------------------------
  242-  271 (53.96/27.72)	N.RLLPPSNNTTMNSK.KII.........KKSLSKGFY...ENN
  273-  298 (35.21/15.21)	DtRFTSP.KNTIPNS...VI.........KS..KHTLY...NGS
  300-  340 (23.09/ 7.11)	N..VLSNSNPCLISSKhKALclqllvdlrRHSDSGPFLnasEN.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     103.83|      18|      40|    1340|    1357|      11
---------------------------------------------------------------------------
 1267- 1284 (24.51/13.41)	TASNIATSLTAAS...KKMSK
 1288- 1305 (25.72/14.51)	AAATTKAATTTES...KQSLP
 1340- 1357 (30.52/18.87)	TATTTTTATTVAS...TVLIP
 1379- 1399 (23.08/12.12)	TAKMTTISNKVAStssTVAIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.69|      20|      29|      92|     111|      12
---------------------------------------------------------------------------
   21-   57 (21.55/ 9.91)	NIYQKHHTNlksdrTITtnidtassstsnRCLTSLST
   92-  111 (40.80/26.62)	NYYHNPHFN.....TIT............KRYTSLNS
  122-  138 (30.34/17.54)	NFLVYP.FN.....TMV............SE..SLNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     103.56|      21|      21|     612|     632|      13
---------------------------------------------------------------------------
  543-  561 (23.25/10.97)	.N.NSDKL.IKKSKGKSIV....CK.F
  612-  632 (35.16/21.25)	AN.PINKK.IKTLKYDSVK....GKTF
  633-  654 (21.21/ 9.21)	AHhPKNKNwIIQLKRNG.Q....SQSF
  672-  695 (23.94/11.57)	SK.PFN.F.ILTLPTEIIKnspwAKFF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.69|      28|      29|    1024|    1052|      14
---------------------------------------------------------------------------
  815-  835 (33.09/12.27)	DFLPPTPPSSSP..PSSPMNITE..............
 1029- 1059 (44.43/25.49)	DFIDWEKACSDN..LSNGQNIVHSSM....lssLDTT
 1060- 1095 (32.17/14.57)	.FPSLLPSCSNDslLSSTSAITENIMnsyvnnyFDDT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.71|      19|      41|     147|     166|      16
---------------------------------------------------------------------------
  147-  166 (29.76/18.50)	IPIDIQSfKDTIGITPPSTT
  191-  209 (31.95/15.37)	VPSSIES.KNLLKETPSSNT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     119.24|      28|      31|     402|     429|      17
---------------------------------------------------------------------------
  402-  429 (51.76/34.47)	KNIYSVFLD...LQQMLLYFYNSCHDHFI..HR
  432-  460 (38.89/23.86)	KNIEKFLIE..kLEMMPEDFIKELREQCI..HH
  475-  506 (28.59/15.35)	YPVLPSFLKvitLPTLLDDSFESEEDWMIsdH.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.24|      24|      31|    1625|    1654|      18
---------------------------------------------------------------------------
 1625- 1648 (41.22/33.27)	TENMTLDENTNGP........VKKEKVFDKGK
 1661- 1692 (33.03/12.96)	SNRVTLPSRKEGSkdaavkkeVKVEEIKPKPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.80|      17|     218|     570|     587|      19
---------------------------------------------------------------------------
  570-  587 (25.58/19.47)	SSSSSSLDrKRKHTQKED
  791-  807 (30.22/18.02)	SSTSSEFD.KKDLMEKED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.75|      10|      40|     703|     712|      20
---------------------------------------------------------------------------
  703-  712 (19.20/ 9.33)	PKSLKEEKKE
  740-  749 (18.55/ 8.74)	PKSSKNEKME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.16|      26|      40|    1502|    1529|      21
---------------------------------------------------------------------------
 1502- 1529 (35.98/26.54)	TNDKLLsSEKSDRGEPILNSLDRvTPTI
 1545- 1570 (41.19/21.78)	TSDVML.SEVSKEIQENLSFLSN.TPSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.06|      20|      32|    1205|    1230|      23
---------------------------------------------------------------------------
 1205- 1225 (34.27/29.58)	MGGLND..PVTMA.......LHTLPSNLhY
 1237- 1265 (25.79/ 6.49)	LGGISStpPSTSSnsvykhhHHINSSNL.Y
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.36|      14|      15|    1951|    1964|      25
---------------------------------------------------------------------------
 1951- 1964 (23.80/16.77)	KENKERKMEKKPMI
 1969- 1982 (22.56/15.43)	KKMRGRSVLKVPVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.48|      12|      30|    2036|    2047|      26
---------------------------------------------------------------------------
 2036- 2047 (20.80/11.98)	HIKSELYNANKE
 2063- 2074 (20.68/11.86)	YIKPELQEKSSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.60|      12|      30|    1573|    1588|      27
---------------------------------------------------------------------------
 1573- 1588 (12.07/18.59)	NENDtahNTNDlSIIS
 1606- 1617 (22.53/12.57)	NLNN...NCNE.TLIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.88|      18|      21|     891|     908|      29
---------------------------------------------------------------------------
  891-  908 (30.48/19.04)	EQKKPSTEKTESSFNPLE
  911-  928 (28.41/17.09)	ESKKDSKSLNYEALNSLK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13720 with Med15 domain of Kingdom Fungi
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