<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13715

Description Putative general RNA polymerase II transcription factor
SequenceMSSSFWSSSHCRYWLVTRSHLLAARSLDSQYATPRQLYCLGIWFANLIQKLGKKLNLRQIPIATATVLFRRFYLKNHYCETNPYLVIAACLFVAAKVEETPVHIKVVVNDAKIVFTENGIRMFSPEPTKVGEMEFYLLEDLDFHLVVFHPYRSLLHICGREPADSGKFAKSRVEEDAEIKRKETEARRKHEDARKVSLGVGRMNAMIDDVSGGEWEESEEKRIRRLMGRGSGEGLMDIDEGVVQMCLFVINDTYRTDVHLLYPPYVISLAVLYIGFCFVAKNNPTGTRTTRGSSFQVTNLASSTDINAALGLDAPPTGVAEFFASFEVSLPILFACIQDIIVLYPIWEAFEPMSRGADAKAEKDKDSFTSDDAEALVRRMIEARAVALTHPDTSSYQLAGSKRRRP
Length406
PositionKinase
OrganismKockovaella imperatae
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Tremellomycetes> Tremellales> Cuniculitremaceae> Kockovaella.
Aromaticity0.10
Grand average of hydropathy-0.147
Instability index47.59
Isoelectric point6.81
Molecular weight45813.04
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13715
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.34|      30|      39|     174|     203|       1
---------------------------------------------------------------------------
  174-  203 (48.30/32.32)	EEDAEIKRKETEARRKHEDARKVSLGVGRM
  216-  245 (50.04/33.73)	EESEEKRIRRLMGRGSGEGLMDIDEGVVQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.56|      18|      60|     256|     273|       2
---------------------------------------------------------------------------
  256-  273 (32.66/21.34)	TDVHLLYPPYVISLAVLY
  317-  334 (28.90/18.12)	TGVAEFFASFEVSLPILF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.22|      21|      32|     113|     133|       4
---------------------------------------------------------------------------
  113-  133 (37.30/22.75)	IVFT..ENGIRMFSPEPTKVGEM
  146-  168 (32.92/19.36)	VVFHpyRSLLHICGREPADSGKF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13715 with CycC domain of Kingdom Fungi
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