<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13700

Description Uncharacterized protein (Fragment)
SequenceAFRAPSPVEAYKPFSPDNFKAPTPPFQSALPPAAPGKQMSASGGSVLTSPGGSVAGPTSPRFTGSDGKPPLPGGPKLNNQGSSKGAAASPAIADVDDEDLPIAALRGQVSSPPAASVKDNPLKALAKKVWLLSQSSQSQSTLDQAASDIDQLVQLTNQYALVPRGTDSKSAKPENLVANTRARLAAKPGVVAGAKRARGKQSVLSIGIDGSDFDAGSSVSDAHSCVDFEHSGDEAGSLGAKRARFGAQSALEGEVEDVNRFLVDTRVEISVDGTREAQAEGRKGTAVLCTYNGGSVSPSALRLLVPPSYPTVSPSVWHDYSAPGFSLPFATAARENFSTAVRRLGGGAVSVGAMARCWDQSVREAIADVALSQGGGCFSNTVGVWMHCA
Length389
PositionTail
OrganismKlebsormidium nitens (Green alga) (Ulothrix nitens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Klebsormidiophyceae> Klebsormidiales> Klebsormidiaceae> Klebsormidium.
Aromaticity0.06
Grand average of hydropathy-0.246
Instability index48.61
Isoelectric point7.81
Molecular weight39870.99
Publications
PubMed=24865297

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13700
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.65|      12|      44|     193|     204|       1
---------------------------------------------------------------------------
  193-  204 (23.11/13.12)	GAKRAR.GKQSVL
  239-  251 (18.54/ 9.21)	GAKRARfGAQSAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.04|      15|      16|       2|      16|       2
---------------------------------------------------------------------------
    2-   16 (30.24/14.19)	FRAPSP..VEAYKPFSP
   19-   35 (24.79/10.49)	FKAPTPpfQSALPPAAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.50|      15|      19|      89|     105|       3
---------------------------------------------------------------------------
   89-  105 (22.03/16.33)	SPAIADVDDEdlPIAAL
  111-  125 (27.48/14.17)	SPPAASVKDN..PLKAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     175.94|      44|     239|      36|      85|       4
---------------------------------------------------------------------------
   36-   80 (77.60/37.57)	GKQMSAsGGSVL.TSPGGSVAGPTSPRFTGSDGKPPLPGGPKLNNQ
  281-  319 (62.23/25.18)	GRK....GTAVLcTYNGGSVS.PSALRLLVPPSYPTV..SPSVWHD
  320-  347 (36.11/12.37)	...YSA.........PGFSLPFATAARENFSTAVRRLGGG......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.28|      13|      21|     348|     362|       5
---------------------------------------------------------------------------
  348-  362 (19.97/17.54)	AVSVGamARCWDQSV
  370-  382 (24.32/13.96)	ALSQG..GGCFSNTV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13700 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PSPVEAYKPFSPDNFKAPTPPFQSALPPAAPGKQMSASGGSVLTSPGGSVAGPTSPRFTGSDGKPPLPGGPKLNNQGSSKGAAASPAIADVDDEDLPIAALRGQVSSPPAASVKDN
5
120










Molecular Recognition Features






MoRF SequenceStartStop




1) AFRAPSPVEAYKPFSPDNFKA
2) KDNPLKALAKKVWLL
1
118
21
132