<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13698

Description Uncharacterized protein
SequenceMEGMRGPSYKTQLCDMLENYLGAEAVEPIRGDTSIRNGKKRRISAGPRPQPMVADPKLQNASKALQDNPDPVAEKCSETEAAFASLLIRGCGHGPQTDFLYTLLPPLHKSALLDWTPLLEYLLAAYPSTTPKNGKAQDDSKPAGAASKPGTPAASPKSPKGSEESLERGPPERLTGGFMAQMRAGSPKEAASPKEMPELSAPALPAFRPVLCRAAHAALDSAAPVKPLTCLALLRLALTWINSATEFPGEGKGLEAEKEPVERERNEGGVDEVVAESMRLVRRLTLDDTHLLPTYVLLDETLILGDSIPSDEPLLSFLYDIHKRRDKVVYYFTRTDCQIRSPTFATLRAPPFTLQGILGEPIKGAELAAAVPPHSREWERAMACLKQGLRNSVSADWWRRVLVLSPQFQQGQVNPSAEFSAPMLTEALVLRTLELLRPYPDSPGEIADCASWQEWCLFADLLFQIVRSGHVDFLSYLEQLSQQGGPKGPPRSPLLAWLFSQLVRLEAIIDIFKRGTQAEKQRTFELLVHFAETPPSELSQAPHVAVLLDWAPSFLVSRLSMSHKHMNIDVPFPALAPAWQADLTKRIKEGESWWQAFEAGKVPQDSGALDDVTTGRLWFLSHSRSQEFTKVWFGMLRSQGTFELPGTAPGEAPLPVIREVKPMPVGFLTGIAIQSLSRLTNMIEELVAMGQPAVSVSMLETYVRVLLVSPQSLYRKLFESLLNKYKPGDPRMTGTMLTLLELLNYRLLPFYRYHNKLRALWGDLERILAALLTLPGQHRLYRLTENVSMSVIGNIHRDFTDIKRATKGLPTSETVNRLMVLNIAVVSKTRGLASPPDVEHIHTAVKHLLAHSTHAWSEKTLRHFPASLREMLKTREDVRGRAVLAEWQKHGKAIITTHSQLAKPAADPAAVSAYLKNAPREFRRWAATALWTNMEGRHDKPNLTNFARALRDFTPEEITGNVYVLVDFILHSCTKGVTKGEPEATVLARTAANLAHILWVEELLPYDVTLLALADRDDHPQALSLLTLLLERPEISQRVQRYCAQRGPAEHWTREEVPVRADLRAALGAHYAGSDRHPPLFDDLCLRALPVLPVLVGRLVEHDRFDAATKLLTSYGPLLTYHPSKLMVVRDLLAYYHGIMPPKLVNTLVTLLDVQKYGFSEPFSNYLKHPENAEPLLAPNYFLNLLTKVAHVLPSMGETLYSRQSLNPAKSGPHMRRGGSTGGSSTPWRLTSVFAKHQDCATQAQVLMATVEVELLAIPFPAERTARALVGAALWPENVGRMERNNRTAMAPRNAPGGSSQSPLYRPGITPSAAQFAETTGIVLAQLPVRFHVAFFEEVQSVISAAPWFNGTLSSLAEPGGGGTLGRLEEPGVRHRLQGWPFAAEANNAAEEGTVTGTTQVLGMAHAFGYAVPFEWLGSLSSLVIRQRPIRSGAHLRLCFKMVGPMVPAMAPSRPLFAKTLALLFTILADVFGRSSTTTAADAAEMSDLVDFLHHCVTLEGRYMSPGDRSAHMSTLRMCTQAIDRLHPELQKLFRHLVQDPESALFAAEIAQKNQQER
Length1558
PositionTail
OrganismKlebsormidium nitens (Green alga) (Ulothrix nitens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Klebsormidiophyceae> Klebsormidiales> Klebsormidiaceae> Klebsormidium.
Aromaticity0.07
Grand average of hydropathy-0.183
Instability index47.89
Isoelectric point8.28
Molecular weight172245.11
Publications
PubMed=24865297

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13698
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     760.45|     306|     511|     526|    1035|       1
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  695-  769 ( 8.88/626.63)	SVSMLETYVRVLLVSPQSLyrKLFESLLNKYKP.GDPRMTGTMLTLLELLNYRL.LPFYRYHNKLralwGDLERILA.............................................................................................................................................................................................................................................................................................................................................................................
  835- 1107 (306.21/315.68)	.............................................................................alltlpgqhrlyrltenvsmsvignihrdftdikratkglptsetvnrlmvlniavvsktrglasPPDVEHIHTAVKHLL.AHSTHAWSEKTLRhfPASLREMLKTREDVRGRAvlAEWQKhgKAIITTHSQLAKPA.ADPAAVSAYLKNAP....REFRRWAATALWTNMEGRHDKPNLTNFAralrdftPEEITGNvYVLVDFILHSCTKGVTK.GEPEATVLARTAANLaHILWVEEL......LP.YDVTLLALADrddhPQALSLLTlLLERPEIsqrvqrycaqrgpAEHWTREEVPVRADLRAA.LGA....HYAGSDRhPPLfdDLCLRAL.PVLPV.LVGR.LVEHDR....FD.A
 1108- 1443 (445.36/-11.75)	ATKLLTSYGPLLTYHPSKL..MVVRDLLAYYHGiMPPKLVNTLVTLLDVQKYGFsEPFSNYLKHP....ENAEPLLA.................................................................PNYFLNLLTKVAHVLpSMGETLYSRQSLN..PAKSGPHMRRGGSTGGSS..TPWRL..TSVFAKHQDCATQAqVLMATVEVELLAIPfpaeRTARALVGAALWPENVGRMERNNRTAMA.......PRNAPGG.SSQSPLYRPGITPSAAQfAETTGIVLAQLPVRF.HVAFFEEVqsvisaAPwFNGTLSSLAE....PGGGGTLG.RLEEPGV............rHRLQGWPFAAEANNAAEEgTVTgttqVLGMAHA.FGY..AVPFEWLgSLSSLvIRQRpIRSGAHlrlcFKmV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     251.46|      59|     199|     340|     399|       2
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  341-  399 (102.80/59.57)	SPTFATLRAPPFTLQGILGEPIKG..AELAAAVPPHSREWERAMACLKQGLRNSVSADWWR
  492-  550 (80.56/46.93)	SPLLAWLFSQLVRLEAIIDIFKRGtqAEKQRTFELLVHFAETPPSELSQAPHVAVLLDW..
  551-  595 (68.10/35.52)	........APSF.LVSRLSMSHKH..MNIDVPFPALAPAWQ...ADLTKRIKEGES..WWQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.75|      13|      34|     145|     157|       3
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  145-  157 (25.18/12.05)	AASKPGTP..AASPK
  180-  194 (20.57/ 8.46)	AQMRAGSPkeAASPK
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.46|      52|     372|      51|     103|       6
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   51-  103 (88.82/52.79)	PMVADPKLQNASKALQDNPDPVAE..KC.SETE.AAFASLLIRGCGHGpQTDFLYTL
  422-  477 (81.64/43.90)	PMLTEALVLRTLELLRPYPDSPGEiaDCaSWQEwCLFADLLFQIVRSG.HVDFLSYL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13698 with Med23 domain of Kingdom Viridiplantae
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