<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13696

Description Uncharacterized protein
SequenceMQRGGAREEAANQRSQRRAHDPPQLQPYVLSSDREPLNSRLGPADFYPPSSDDPELVLSRETVSAGYKEAVPAIEESREVLYSLVSAQALWTRQGLQRCRAALRARFRALASTLARKRKAGQVFGVPLAGPLLARPGAHPEVKPAPSEEARQRWLAEVALGKPLRQLADSVPAGFYGRPLVEGILRARLPVGRATWVVKVCYLGQAKRTDAWTRDLLAALDDALAQAAGEAHSAGGAAGKLGRLSFSPVTSPLAGQSSPGAGGGLGGGLPGEQWAQLMALAVAHCGEGLVNSTALGEWVLAQFGDMGRGVARVGLLLPLVEALLDGALWATPQTHLEQITGAALSSLEQLCLMEEAPDRASAVSDSQVALRLGGLVRCVLVASPDSFLGVGALPLPSYMLSCGKRPGVVEGKGEGALVAYQDTEVLEEVQRGVLRKRALLAAAVNPIVLRNNEAKVIAALDKALLLGDVGAACTSFSDPLVSRDWDGGEEWEGRGKLRAAVGLVCEWAIHPSRNEAEKTGGVGSGQERLSEEPVEGGLLRSDDAAHSCVAVTGTLALARVYLAAAILWRLSKEQTGSSREPEARADLLHELLVDWLQRCEAPTTDVGQGLQEALLAELVRRGLLDPVRFARQLVADGALERRASASERACARKLRGCLEQLPAGEEVNRDGKSELQMERRAALAAGQRKLRGGGAKLEQSGEEERRRQRARVERAIRAVLELPGSRDGSGNNEGAEARHRPAKRQKMEHSVGKERGTELVAVDRWWLRKSAENDWRVQEVSGTREDMIEDLRKEEGRGAMEVDGTPLGTAGLGRIQEDPSVWSWGEVEGAIGGLPFLDKREVGSWVVESIRAALSGEGEQTQGHTSGAWRGQHEAAGREEEVRWHDRKSEKAGMAEHSEVWSEAEPEVSLGTGGSWAGGVVRCPVLLRGAYLLDALQQHGALLDLLLDHLASNRSSDKTHGAQDLASPPGGAKQEAACPDECLLALLLLYAPLFAAMDRLPDLLSALVSRGCQGAMRTREAAAGLMARLRVQYGQLQDVRAWEAAARARPECSTVWEAVGNAGRTLPLGSVLGVDVVVTEQLQNRCRSGLAMETGGPAQLARMCRADINRNEGPHQSSWTERSAESRMDELACRVGARLRGVLGGDVGSAAGVAAVVGALVEAAADGLVAEAGGPGEGGVQDLVKRQRRGASLLAFCISVLRRFRGLSAGPTFQSGVVHALVHTVQAAQPAPVPVVALPYAHMSPETPDLGPETTGEAAGDPAGELSEAVRAAMALAVAEALLAEGWLELRTLLEALHLGNTLVSVHLRSVGPPPDVGAARAAVLWFRLLLGGVCSGGTADAVGGAVTALVEGPHPWFLLRARALLPADAVYAPLSALLRLTFDVRGSLGGPEMQLLKAEAAAALAEALQGDHVRDCLLADSGRLLALMRSDSAQAAAAVGVDAQRTSGEVGSWQAAALALLPLHGTRLLAALLEGRAVAPETAGGETAEERVAALEGALVEGLLRSLEALAATTFHWQCLRVRLLLDQQVVLEKLRAGSTAVAALACVHSLDPAQLAECEKTFTTAVLTRLLLRPAAAPLYSQLAHALGRGFGDYLIQQVRWALEGADMLQGRKSLRQLLEASAARDGFRVRPSPAPTPASPPPTIPPFALERGLAELVLPLLAGSSSETCAGFAGELVRQLAALEAHISAAARHASKGPSGESSAPARGAAQWGKGLDGFAALPGSPRGGGGQWGPASEVAAPASVAALQTSLWLRLQFVLPMLPQIHADRDPTPRNMRLTLAPVLLRLLASPLVQEAPLIRTPSDPLPPDPERGYAEAAAAAAAAGAGEGLFGRLHAVLAALVSSTWAAWLKPPPGRGPAKPLRDVGPFDRHVAERMQAELDSLRGRLPAAVHQRLQAVLPCLPPHRCTIPTIAAVNKLSTGSSHLAQTGRGPLEGTANWATESGLEMDPWLLLEEGATGRSSNASSETSVAPKAAPWLKGAVRVARKELTYAPKEEEVED
Length2004
PositionKinase
OrganismKlebsormidium nitens (Green alga) (Ulothrix nitens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Klebsormidiophyceae> Klebsormidiales> Klebsormidiaceae> Klebsormidium.
Aromaticity0.04
Grand average of hydropathy-0.108
Instability index45.59
Isoelectric point6.16
Molecular weight211431.25
Publications
PubMed=24865297

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13696
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|    1064.41|     225|     237|    1095|    1331|       1
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  911- 1073 (103.89/28.38)	...................................................................................GTGGS.WAGG..VvRCPV..LLRGAYLLdALQqhGALLD............LL.....LDHLASNR....SSDKTHGAQdlASP.PggakqeAA.......CPdecllalllL....YA.PLfAAMD...RLPD..LLSalvsrgcqgamRTREAAAGLMArlrvqyGQLQD.VRAWEAAARARP.......ECSTVWEA..VGNAGRTLPLGSVlG....................
 1095- 1331 (358.81/140.52)	GGPAQ.LARMCRADInrnEGPHqsSWTERSAESRM..DELACRVGARLRgvLGGDV.GSAAGVAAvvgALVEAAADGL...VAEAGGP.GEGG..V.QDLVKRQRRGASLL.AFC..ISVLR............RFRGLSAGPTFQSGV....VHALVHTVQ..AAQ.P......AP.......VP.........V....VALPY.AHMSP..ETPD..LGP...........ETTGEAAGDPA......GELSEAVRAAMALAVAEALLAEGWlELRTLLEALhLGNTLVSVHLRSV.GPPPDVGA.ARAAVLWFRLLL
 1337- 1527 (260.95/86.89)	GGTADaVGGAVTALV...EGPH..PWFLLRARALLpaDAVYAPLSALLR..LTFDVrGSLGGPEM...QLLKAEAAAA...LAEA.LQ.GD.H..V.RD.........CLL.ADS..GRLLA............LMRSDSAQAAAAVGVdaqrTSGEVGSWQ..AAA.L......AL.......LP.........L....HGTRL.LAALL..EGRA..VAP...........ETAG.............GETAEERVAAL.....EGALVEGL..LRS.LEAL....AATTFHWQ................CLRVRLLL
 1552- 1719 (206.90/67.26)	LDPAQ.LA.......................ECE...KTFTTAVLTRL.....................LLRPAAAPLysqLAHALGR.GFGDylI.QQ.VRWALEGADML.QGR..KS.LRqlleasaardgfRVRP.SPAPT.................P..ASP.P......PT.......IP.........P....FALER.GLAEL..VLPL..LAG...........SSSETCAG.FA......GELVRQL.AALEAHISAA.......................ARH.ASK.GPSGESSApARGAAQWGKGL.
 1721- 1864 (133.86/39.27)	............................................................................GF...AALPGSPrGGGG..Q.WGPASEVAAPASVA.ALQ..TSLWL............RLQ...........F....VLPMLPQIH..ADRdP......TPrnmrltlAP.........VllrlLASPL.VQEAPliRTPSdpLPP...................DPE......RGYAEAAAAAAAAGAGEGLF..G..RLHAVLAAL.VSSTW.AAWLK....PPPGRGP.AK..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.24|      24|      24|     253|     276|       3
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  228-  253 (31.86/12.47)	AGEahSAGGAAGKLGRLSFSPVT..SPL
  254-  277 (44.06/20.64)	AGQ..SSPGAGGGLGGGLPGEQW..AQL
  278-  302 (26.32/ 8.76)	MAL..AVAHCGEGLVNSTALGEWvlAQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     344.74|      79|      83|     485|     567|       4
---------------------------------------------------------------------------
  357-  402 (46.65/17.84)	....................................PDRASA.....VSDS.QVA...LR....LGGLVRCVLVAspDSFLGV.GAL.........PLPSYMLSC...
  403-  476 (82.78/39.93)	........G..KRpgvVEGKGE..GA..LV.......AYQDTEVLEEVQRG.VLRkraLLAAAVNPIVLRNNE.A..KVIAALDKAL.........LLGDVGAACTSF
  485-  567 (128.80/76.67)	W.....DGG..EE...WEGRGKLRAAvGLVCEWaihPSRNEAEKTGGVGSG.QER...LSEEPVEGGLLRSDDAA..HSCVAVTGTL.........ALARVYLAAAIL
  568-  652 (86.51/42.12)	WrlskeQTGssRE...PEARADLLH..ELLVDW...LQRCEAPTT.DVGQGlQEA...LLAELVRRGLLDPVRFA..RQLVA.DGALerrasaserACAR........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     156.80|      35|      35|     680|     714|       5
---------------------------------------------------------------------------
  653-  677 (24.30/ 7.22)	..........KLRGC...L.EQlpAGEEVN.....RD..GKSELQM
  680-  714 (59.77/29.75)	RAALA.AGQRKLRGGGAKL.EQ..SGEEER.....RR..QRARVER
  717-  749 (41.35/18.05)	RAVLElPGSRD..GSG.NN.E....GAEAR.....HRpaKRQKMEH
  764-  797 (31.38/11.71)	RWWL.....RKSAENDWRVqEV..SGTREDmiedlRK..EEGR...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.59|      23|      24|    1933|    1955|       6
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 1933- 1955 (43.44/25.90)	GRGPLEGTANWATESGLEMDPWL
 1960- 1982 (39.15/22.43)	GATGRSSNASSETSVAPKAAPWL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13696 with Med12 domain of Kingdom Viridiplantae
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