<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13694

Description Pre-mRNA-processing factor 40
SequenceMAGRGRGMTLPAWMTAAGGQPPPAGGGPLSPPGAPGPAGGPPQGQFQRPLGAPPTGFSGAPGGGGYPGGASYPGAPPARPPGQTGPPGQAQYPPGARPPVAPGGYGAPGQLGPPPTGAPPGPSGFAAPPSLAPLPRPGGTPPPGTFQFPPRPGFGPPGGAPPGGQPGFPQGARPPFLGGSPGAPPGSFSPTAGAPPSGAPPAGMAPAGAALWTEHKSPNGRTYYFNKVTKQSVWEKPFEMMTPEELKNPFNIWKEHTNPDGRTYYFNKITKLSTWTLPEDLKAAKEAQAAAVGGPPLGAGPGASLAFRPPPAMSPSPAMAPYVPSPVTPLTGASPAALSPAPMLPTPEQAGNGVSVNGRASAENLKEAKKAQPVVGKINTTPAEEVKPTLKNEPLVFANKQDAKNAFKEMLESQKIGLDWTWEQAMKKIITDKRYVALKTLGEKKQAFNEYQTQKKKAEKEEQRLRQKKAREDFLTMLQTSTLLTATTRWSKAVVMFENDPRFKALEDDREREDMFEDYLLDLEKKEKEEKKRERKKHMDAFRAFLETCDFIKSTTPWRKVADKLEEDESATKLERVDKMDVFTEYIRDLEKKEEEVKQLEKEKKRRQERKNRDAFRDLMNEHKAAGELSAKTKWKDYLEKVKEAPAYAAVAGNAGGSTPKELFEDLIEELTTQLRDEKAKVKDALKEGAVALKITSATEFGDFQAAVAQAGDLAAISETNLKLIFKDLLERAKEKEEKEVKKRKRLDEDFVEALRATRAVYVDSTWAELKPLVEKDPAYKLIEEPDRVRIFEEYLARQKAKAEEKEKRHREKDDKDKDKDKSHKRDHEKDKDKDRERKRDKGRSGREKEHRGREKERDVPPPPEEDYKMEDADAPEKEHESEERRRERRHRKRHRSASGEPEEGGEKERKHRHKSRDEKKEKSAKKHGHGSESEGEGRHKWHRSRHGDAGGGRAEGGEKNREDGELDSEDGEIR
Length975
PositionUnknown
OrganismKlebsormidium nitens (Green alga) (Ulothrix nitens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Klebsormidiophyceae> Klebsormidiales> Klebsormidiaceae> Klebsormidium.
Aromaticity0.06
Grand average of hydropathy-1.100
Instability index53.48
Isoelectric point9.11
Molecular weight107468.53
Publications
PubMed=24865297

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13694
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     427.30|      40|      40|      86|     125|       1
---------------------------------------------------------------------------
   18-   39 (37.32/ 8.53)	.............GGQPPP....AGGG...P..LSPP........G.A.PG.PA.G.
   41-   83 (60.55/18.43)	P.PqGQFQR.P.LGA.PPTgfsgAPGGGGYPGG.ASY......P.G.APPArPP.GQ
   86-  125 (93.37/32.41)	P.P.GQAQY.P.PGARPPV....APGGYGAPGQLGPP......PTG.APPG.PS.GF
  128-  154 (51.15/14.42)	P.P.SLAPL.PrPGGTPP......PGTF....QF..............PPR.P..GF
  156-  179 (47.99/13.08)	P.P.GGA.........P.......PG.....GQPGFP......Q.G.ARPP.FL.GG
  180-  212 (53.09/15.25)	S.P.GA....P.PGSFSPT....A....GAPPS.GAP......PAGmAPAG.AA.LW
  218-  266 (33.97/ 7.11)	P.N.GRTYYfN.KVTKQSV..weKPFEMMTPEELKNPfniwkeHTN..PDG.RTyYF
  315-  351 (49.85/13.87)	PsP.AMAPY.V.PS...PV....TPLTGASPAALSPA......PML.PTPE.QA.G.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     466.38|      74|      74|     784|     857|       2
---------------------------------------------------------------------------
  448-  514 (71.29/30.17)	.FNEY.QTQKKKAE......KE....EQRLR.QK..KARE.........DFltmlQ...TS...T.........LL.T.AT..TR...........WSKAVVMFENDPRFKALE.......DDRERED
  515-  581 (80.13/34.92)	MFEDYLLDLEKKEK......EE....KKRER.KKH.MDAFRA..FLETCDF....I...KS...T.........TP.W.RKvaDK...........LEEDESATK...............lERVDKMD
  582-  683 (67.87/28.34)	VFTEYI.RDLEKKEeevkqlEK....EKKRRqERKNRDAFRDlmNEHKAAG....ElsaKT...K.........WK.D.YL..EKvkeapayaavaGNAGGS.TPKELFEDLIEelttqlrDEKAKVK
  725-  790 (62.05/25.21)	IFKDLLERAKEK.E......EK....EVKKR.KRLDEDFVEA..LRATRAV....Y...VD...StwaelkplvEK.D.PA..YK..................................liEEPDRVR
  791-  864 (108.44/50.13)	IFEEYLARQKAKAE......EK....EKRHR.EKDDKDKDKD..KSHKRDH....E...KD...K.........DK.D.RE..RK...........RDKGRSGREKEHRGREKE...rdvpPPP....
  865-  909 (40.18/13.46)	..EEDYKMEDADAP......EKehesEERRR.E.............................................rRH..RK...........RHRSASG..EPEEGGEKE..............
  913-  961 (36.42/11.44)	............................RHK.SRDEKKEKSA..KKHGHGS....E...SEgegR.........HKwH.RS..RH...........GDAG.GGRAE...GGEKN..............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.85|      29|      39|     359|     396|       3
---------------------------------------------------------------------------
  376-  413 (31.07/31.64)	GkINTTPAEEVKPTLKNEPLVfankqdaKNaFKEMLES
  417-  447 (44.78/19.11)	G.LDWTWEQAMKKIITDKRYV.....alKT.LGEKKQA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13694 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LPEDLKAAKEAQAAAVGGPPLGAGPGASLAFRPPPAMSPSPAMAPYVPSPVTPLTGASPAALSPAPMLPTPEQAGNGVSVNGRASAENLKEAKKAQPVVGKINTTPAEEVKPTLKNEPL
2) MAGRGRGMTLPAWMTAAGGQPPPAGGGPLSPPGAPGPAGGPPQGQFQRPLGAPPTGFSGAPGGGGYPGGASYPGAPPARPPGQTGPPGQAQYPPGARPPVAPGGYGAPGQLGPPPTGAPPGPSGFAAPPSLAPLPRPGGTPPPGTFQFPPRPGFGPPGGAPPGGQPGFPQGARPPFLGGSPGAPPGSFSPTAGAPPSGAPPAGMAPAGAALWT
3) QKAKAEEKEKRHREKDDKDKDKDKSHKRDHEKDKDKDRERKRDKGRSGREKEHRGREKERDVPPPPEEDYKMEDADAPEKEHESEERRRERRHRKRHRSASGEPEEGGEKERKHRHKSRDEKKEKSAKKHGHGSESEGEGRHKWHRSRHGDAGGGRAEGGEKNREDGELDSEDGEIR
277
1
799
395
213
975










Molecular Recognition Features






MoRF SequenceStartStop




1) DYKMEDA
2) GGEKERKHRHKSRDEKKEKSAKKHGHGSESEGEGRHKWHRSRHGDAG
3) RKRHRSA
4) YYFNKV
867
905
892
223
873
951
898
228