<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13691

Description Uncharacterized protein
SequenceMASFRKRGAVALALDPLPFKKLRHITAEGGEEASKEPTRDEQLGALLGRLPFQADGATLPAALGGAAGGAAENAGRQQWMRELGEQLAAAQEELNIMLDVIHQVEAGTLVTVENVQRPKPTLAEHKDDVAKRVGMKQAATQSAHERLQAVAQRIKSTVDTDQAFYDDLRRLQADWKVKRLVSHGRVRFLVDLSLPPPMRGAPPVSSRLRSSLPEREQAAAQVELTRGKDGHVAAVPEAHRPQWEFVVQIHEQGGHIQRESEATGASEHDGPDVAMIDVKEGGEAFVGEKAETAVSNLGRGREAGPSQGANIEEVHVRLRRLQASLIAEGVFDSHLGEAVAHPPSGALVVRASTSELELSLAHGQRLRLYLRRTPRGGVEEHGRAGEGKAAEARAFLMEHFIEVRYGGQKRGRSGTEEEEKKQRRGGDHGGSGSAEAEGGLARLCRALQQEHAWSIIQRQVEKAVRAIPGAHTTACLPSLFRSPPAEWWLAVHVAGREVVTVLDDGTRCQIRGQGAPHHGDINAAYITAYVQDEIARYQIRQVCTAALERHLAAELRGLLTVVLVAALDDEHERTGWASLRRALVPENGSKIDADVEKAELWVTASPASSDGGIGWQVTYKAQRKGWRGKREGVKGHDVPLEVVKKMGGEGKLGEFLTWLTGVISTGQ
Length667
PositionHead
OrganismKlebsormidium nitens (Green alga) (Ulothrix nitens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Klebsormidiophyceae> Klebsormidiales> Klebsormidiaceae> Klebsormidium.
Aromaticity0.04
Grand average of hydropathy-0.453
Instability index43.89
Isoelectric point6.82
Molecular weight72355.70
Publications
PubMed=24865297

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13691
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     611.06|     109|     122|     238|     346|       1
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   35-  145 (120.58/52.89)	KEPTRDEQLGAllGRLPFQADGATLPAALGGA..AGGAAE.....NAGR.Q....Q.WMRELGEQ....LAAAQE..EL..............................nimldvIHQV.EAGTLVTVE....NVQRP.KPTLA.EHKD.DVAkR...V...........GMKQAATQSAHE
  146-  288 (123.61/54.40)	RLQ.AVAQ..R..IKSTVDTDQAFYDD....L..RRLQADwkvkrLVSH.GrvrfL.VDLSLPP........PMR..GAppvssrlrsslpereqaaaqveltrgkdghvaavpeAHRP.QWEFVVQIHEQGGHIQRESEATGASEHDGPDVA.M...I...........DVKEGGEAFVGE
  289-  413 (142.33/63.74)	KAETAVSNLGR..GREAGPSQGANIEEVHVRL..RRLQAS.....LIAE.G....V.FDSHLGEA....VAHPPS..GA......................lvvrastselelslAHGQ.RLRLYLRRTPRGG.VEEHGRAGEGKAAEARAFL.MehfI...........EVRYGGQKRGRS
  414-  548 (117.98/51.59)	GTEEEEKKQRR..GGDHGGSGSAEAEGGLARL.cRALQQE.....H.AW.S....I.IQRQVEKA....VRAIP...GA.............httaclpslfrsppaewwlavhvAGRE.....VVTVLDDGTRCQIRGQ..GAPHHGDINAA.Y...ItayvqdeiaryQIRQVCTAAL.E
  549-  654 (106.56/45.89)	RHLAA..EL.R..GLLT.VVLVAALDDEHERTgwASLRRA.....LVPEnG....SkIDADVEKAelwvTASPASsdGG........................................iGWQVTYKAQRKGWRGKRE....GVKGHDVP.LE.V...V...........K.KMGGEGKLGE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13691 with Med17 domain of Kingdom Viridiplantae
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