<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13690

Description Putative Mediator complex subunit Med25
SequenceMAPHQLVLVVEGNLVMLPYWPAIRSEYIDPIIAGLASDTQGLTESPEYALVVFYTLSFQSSCLLQQTGWTNNVEEFGGWLSRIDFCGGGCAEAAVAEGLAEGLAMCKDLPMSSPHSRHCLLIGTTQPHKFPSALRCPPSSLGSQHGATNTPCWLADAHNVASAFPRCGVSLSVISSPLVGPKNVPQVSGPYAALFQMAMEQPGGVRDVFEGMSKKFPHHMVLISERFVSARRALRPHDTPPPTIVPHMPSPPLHLSIPSAAPSSSSQGLPATPLASSWSSNRAPPENNQATMNQQGQQASQNGGAAWHRNPPPPQNPQQGSALPQKPMASSGSAESLEILGSNPAPPPLRRHTTPPAAQLNPPPEAHRRHHTAPAALRGGLAAQQGSPQDSQRQSGEEGGSQQMVRVWAGQLVFSLQGKEVPMCPLEAFLLENKMVHGLTRDWPPKLVGAKLVKQADARASLPFQNAIESIIFKPGKPMHPGLSKLAAQQMGVMVELPRQYMALLYVEDKKKLLGLYCPKKLE
Length523
PositionUnknown
OrganismKlebsormidium nitens (Green alga) (Ulothrix nitens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Klebsormidiophyceae> Klebsormidiales> Klebsormidiaceae> Klebsormidium.
Aromaticity0.06
Grand average of hydropathy-0.277
Instability index64.81
Isoelectric point8.62
Molecular weight56124.72
Publications
PubMed=24865297

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13690
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.47|      15|      15|     343|     357|       1
---------------------------------------------------------------------------
  281-  295 (21.83/ 6.20)	NRAPPENNQATMNQQ
  343-  357 (33.38/13.33)	NPAPPPLRRHTTPPA
  361-  375 (29.26/10.78)	NPPPEAHRRHHTAPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     167.44|      44|     225|     211|     254|       2
---------------------------------------------------------------------------
  111-  211 (29.59/ 9.57)	MSSPHSRHCL...LIGttqpHKFPS...ALR...CPPsslgsqhgatntpcwladahnvasafprcgvslsvissplvgPKNVPQVSGP...yaalfqmameqpggvrdvfeG
  212-  254 (80.77/37.90)	MSKKFPHHMV...LIS....ERFVSARRALRPHDTPP..........................................PTIVPHMPSPPLH.....................
  439-  482 (57.08/24.79)	LTRDWPPKLVgakLVK....Q..ADARASL.PFQNAI..........................................ESII.FKPGKPMH...................pG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     124.65|      26|      73|     303|     328|       4
---------------------------------------------------------------------------
  303-  328 (51.94/20.65)	GGAAWHRNPPPPQNPQQGSALPQKPM
  379-  404 (41.07/14.92)	GGLAAQQGSPQDSQRQSGEEGGSQQM
  405-  426 (31.64/ 9.94)	.VRVW...AGQLVFSLQGKEVPMCPL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13690 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FVSARRALRPHDTPPPTIVPHMPSPPLHLSIPSAAPSSSSQGLPATPLASSWSSNRAPPENNQATMNQQGQQASQNGGAAWHRNPPPPQNPQQGSALPQKPMASSGSAESLEILGSNPAPPPLRRHTTPPAAQLNPPPEAHRRHHTAPAALRGGLAAQQGSPQDSQRQSGEEGGSQ
227
402










Molecular Recognition Features






MoRF SequenceStartStop




NANANA