<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13687

Description Transcription elongation factor (TFIIS) family protein
SequenceMARNKTPKFAWRSFFAASGHDIWAIIAKAIEVAAEDEVSELRKRRDGIVEQMYRLSAVAVVPEAGCTSVEEGAGVQALAQREGFVDGVDTSTAPSKRINPSALQSDAAETDTVVNGSQQPVQTTASPRGEKAHQKVTSLGAARRGDVDVSSRTGYADEEELQVAIEQDSLRMQEILLSRSKLSAPNKSEEAILQAMASLERMNITVEELKATEIGKTISSLRKHPAKPVQIKAKHLVKSWKELVEDFQAVTNEISKKSSTDSIAIEGGLEAPPLDAATLASRNTSAELSQLLEDFTAEDLAAGLEKLSSTVTPGSAPVNSRLAFLSPVYDPRPPASRDSDFEAATNPASAASEPSGVSTDKETREKAAAEKWQQAAKLNGVPEGGGGLRGQSLGRGDFVSAEVEKKESAGERSERSSGVVASGDTPKRARSLKETDVFGEGEGPAKKARVGEGSGPDGHRTESLGTGAKADVKSASERGAPSAQPPGSSSKASGDLRLGQDRARSKTPEAAVQSSGHGSNPARASSSKPPGVVQATGAPGSQLGGRQPGKPGERPRSGTPELPVKLGRPSLSPVRTPVRPVSHSADGQKPLPKPHSANNFLQFNDTAKRATAPPRRNPEMRDPPPKQQSGVEQPVVGSQANHANGEKGRERHFHAGGVSEARKPAVGKPKKTPGLESASDDDLFDELDPLPRARKQSVRTPDGAPARRATSAADVGKSRTPVGSNSGSEPETGLEEEDGFLSDSDSEEMGDLLMEPANKLEETKRRLHEKYLQAENAKKSRTTLELKAGDVPTRKKALGHSDRSKARGSIHSKLSKLARR
Length820
PositionUnknown
OrganismKlebsormidium nitens (Green alga) (Ulothrix nitens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Klebsormidiophyceae> Klebsormidiales> Klebsormidiaceae> Klebsormidium.
Aromaticity0.03
Grand average of hydropathy-0.772
Instability index54.83
Isoelectric point8.89
Molecular weight86755.23
Publications
PubMed=24865297

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
translation elongation factor activity	GO:0003746	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13687
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     540.72|      84|      91|     419|     502|       1
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   88-  171 (59.74/20.95)	..............................VDTSTAP..SKRinP.....SALQsdaaETDTVVN..GsQQP......VQ....TT.ASPRGekaHqKVTSLGAARRGDV.DVSSRTGYADEEE..LQVAIE.QDSLR
  172-  259 (65.64/23.82)	M.QEI...............llsrsklsapNKSEEAI..LQA..M.....ASLE....RMNITVE......ELK.ATEIG....KTiSSLRK...H.PAKPVQIKAKHLV.KSWKELVEDFQAV..TNEISKKSS...
  279-  339 (47.41/14.97)	...............................LASRNT..SAE..L.....SQLL....E.DFTAEdlA.AGLEKlSSTVT....PG.SAPVN...S.RLAFL................SPVYDP..RPPASRDS....
  340-  389 (47.71/15.11)	............................................................D.FEA..A.TNPAS.AASEP....SG.VSTDK...E.TRE...........KAAAEKWQQAAKL..NG.VPEGGGGLR
  390-  497 (114.74/47.64)	.GQSLgrgdfvsaevekkesagerserssgVVASGDT..PKR..A.....RSLK....ETDVFGE..G.EGPAK.KARVG....EG.SGPDG...H.RTESLGTGAKADV.KSASERGAPSAQP..PGSSSKASGDLR
  498-  590 (93.78/37.47)	LGQDR................arsktpeaaVQSSGHGsnPAR..A.....SSSK....PPGVVQA..T.GAPGS.QLG.G....RQ.PGKPG...E.RPRS.GT.PELPV.KLGRPSLSPVRTPvrPVSHS.ADGQKP
  591-  674 (65.60/23.79)	LPKPH.....................sannFLQFNDT..AKR..AtapprRNPE....MRDPPPK..Q.QSGVE.QPVVGsqanHA.NGEKG.....RERHFHAGGVSEA.RKPA.VGKPK.KT..PG..........
  676-  730 (46.10/14.33)	..................................................ESAS....DDDLFDE..L.D.PLP.RARKQ....SV.RTPDG...A.PARR.ATSA.ADVgKSRTPVGSNSGSE..P...........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13687 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SRLAFLSPVYDPRPPASRDSDFEAATNPASAASEPSGVSTDKETREKAAAEKWQQAAKLNGVPEGGGGLRGQSLGRGDFVSAEVEKKESAGERSERSSGVVASGDTPKRARSLKETDVFGEGEGPAKKARVGEGSGPDGHRTESLGTGAKADVKSASERGAPSAQPPGSSSKASGDLRLGQDRARSKTPEAAVQSSGHGSNPARASSSKPPGVVQATGAPGSQLGGRQPGKPGERPRSGTPELPVKLGRPSLSPVRTPVRPVSHSADGQKPLPKPHSANNFLQFNDTAKRATAPPRRNPEMRDPPPKQQSGVEQPVVGSQANHANGEKGRERHFHAGGVSEARKPAVGKPKKTPGLESASDDDLFDELDPLPRARKQSVRTPDGAPARRATSAADVGKSRTPVGSNSGSEPETGLEEEDGFLSDSDSEEMGDLLMEPANKLEETKRRLHEKYLQAENAKKSRTTLELKAGDVPTRKKALGHSDRSKARGSIHSKLSKLARR
2) VDTSTAPSKRINPSALQSDAAETDTVVNGSQQPVQTTASPRGEKAHQKVTSLGAARR
320
88
820
144










Molecular Recognition Features






MoRF SequenceStartStop




1) EEDGFLSD
2) EKGRERHFHAGGVSEARKPAVGKPKKTPGLESASDDDLFDELDPLPRARK
3) EMGDLLMEPANKLEETKRRLHEKYLQAE
4) NFLQFNDTAK
5) RTESLGTGAKADVKSAS
6) SLKETDVFGEGEGPAKKARV
7) TTLELKAGDVPTRKKALGHSDRSKARGSIHSKLSKLARR
736
646
748
599
460
431
782
743
695
775
608
476
450
820