<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13687

Description Transcription elongation factor (TFIIS) family protein
SequenceMARNKTPKFAWRSFFAASGHDIWAIIAKAIEVAAEDEVSELRKRRDGIVEQMYRLSAVAVVPEAGCTSVEEGAGVQALAQREGFVDGVDTSTAPSKRINPSALQSDAAETDTVVNGSQQPVQTTASPRGEKAHQKVTSLGAARRGDVDVSSRTGYADEEELQVAIEQDSLRMQEILLSRSKLSAPNKSEEAILQAMASLERMNITVEELKATEIGKTISSLRKHPAKPVQIKAKHLVKSWKELVEDFQAVTNEISKKSSTDSIAIEGGLEAPPLDAATLASRNTSAELSQLLEDFTAEDLAAGLEKLSSTVTPGSAPVNSRLAFLSPVYDPRPPASRDSDFEAATNPASAASEPSGVSTDKETREKAAAEKWQQAAKLNGVPEGGGGLRGQSLGRGDFVSAEVEKKESAGERSERSSGVVASGDTPKRARSLKETDVFGEGEGPAKKARVGEGSGPDGHRTESLGTGAKADVKSASERGAPSAQPPGSSSKASGDLRLGQDRARSKTPEAAVQSSGHGSNPARASSSKPPGVVQATGAPGSQLGGRQPGKPGERPRSGTPELPVKLGRPSLSPVRTPVRPVSHSADGQKPLPKPHSANNFLQFNDTAKRATAPPRRNPEMRDPPPKQQSGVEQPVVGSQANHANGEKGRERHFHAGGVSEARKPAVGKPKKTPGLESASDDDLFDELDPLPRARKQSVRTPDGAPARRATSAADVGKSRTPVGSNSGSEPETGLEEEDGFLSDSDSEEMGDLLMEPANKLEETKRRLHEKYLQAENAKKSRTTLELKAGDVPTRKKALGHSDRSKARGSIHSKLSKLARR
Length820
PositionUnknown
OrganismKlebsormidium nitens (Green alga) (Ulothrix nitens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Klebsormidiophyceae> Klebsormidiales> Klebsormidiaceae> Klebsormidium.
Aromaticity0.03
Grand average of hydropathy-0.772
Instability index54.83
Isoelectric point8.89
Molecular weight86755.23
Publications
PubMed=24865297

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
translation elongation factor activity	GO:0003746	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13687
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     540.72|      84|      91|     419|     502|       1
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   88-  171 (59.74/20.95)	..............................VDTSTAP..SKRinP.....SALQsdaaETDTVVN..GsQQP......VQ....TT.ASPRGekaHqKVTSLGAARRGDV.DVSSRTGYADEEE..LQVAIE.QDSLR
  172-  259 (65.64/23.82)	M.QEI...............llsrsklsapNKSEEAI..LQA..M.....ASLE....RMNITVE......ELK.ATEIG....KTiSSLRK...H.PAKPVQIKAKHLV.KSWKELVEDFQAV..TNEISKKSS...
  279-  339 (47.41/14.97)	...............................LASRNT..SAE..L.....SQLL....E.DFTAEdlA.AGLEKlSSTVT....PG.SAPVN...S.RLAFL................SPVYDP..RPPASRDS....
  340-  389 (47.71/15.11)	............................................................D.FEA..A.TNPAS.AASEP....SG.VSTDK...E.TRE...........KAAAEKWQQAAKL..NG.VPEGGGGLR
  390-  497 (114.74/47.64)	.GQSLgrgdfvsaevekkesagerserssgVVASGDT..PKR..A.....RSLK....ETDVFGE..G.EGPAK.KARVG....EG.SGPDG...H.RTESLGTGAKADV.KSASERGAPSAQP..PGSSSKASGDLR
  498-  590 (93.78/37.47)	LGQDR................arsktpeaaVQSSGHGsnPAR..A.....SSSK....PPGVVQA..T.GAPGS.QLG.G....RQ.PGKPG...E.RPRS.GT.PELPV.KLGRPSLSPVRTPvrPVSHS.ADGQKP
  591-  674 (65.60/23.79)	LPKPH.....................sannFLQFNDT..AKR..AtapprRNPE....MRDPPPK..Q.QSGVE.QPVVGsqanHA.NGEKG.....RERHFHAGGVSEA.RKPA.VGKPK.KT..PG..........
  676-  730 (46.10/14.33)	..................................................ESAS....DDDLFDE..L.D.PLP.RARKQ....SV.RTPDG...A.PARR.ATSA.ADVgKSRTPVGSNSGSE..P...........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13687 with Med26 domain of Kingdom Viridiplantae
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