<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13685

Description Pre-mRNA-processing protein
SequenceMGQNHFQRPTPSNGPPMQRPLGGSSGPPPTGQPGAPFGQPARQAPPGNPSAPFLRPPPQHLPMQQPQGLAPPSSQVRPGPPSSSTAGPAPQRPPQQFSLPPRPFSPGPPSNFRPPVWGLPPRGGPPLQQGPPPAFAPGGRPPMQWPPGHPGMVRPGGFPASGPRLQGASTGVNSVQGGPGELNSTQGGAGSPAGQKAEAGKDEGKKEMGTESEEVRKAWSAHKNDEGVAYYYNSVTGESTYEKPKGFVGEEVDIIPVAWERIDGTDWHLVTTNLDSKYYYNTTTQETSWQVPAAVAEQRQKKAEEASVPDRANGESAVGTIKKKLHEEDAIAEVGKETPPEKDGKDEEGNGAEQKQSEKEKLAADFKEMLKEKKVPPFAKWDKELPKIFADPRFKAIATTAERRALFDRYVKTRAEEERLEKREALRAAMNGFRELLDEVAEELDHTVTYADFETMKGDDPRFKALEKKERETLLNERIAPLRKAEEERLRKEREAAVTAFHELLAEKGANETTKWATLKEEVREDPRYKAVARNEREQVFNDFLAKWKGGKESEVEEKLKAHEREARKRKEREEEELERIRTKARQKDALDSYKAILAQKVKEADATWADWRRRIEKEAEEKQVTPHLEAKELEHLFKEHVRGIMDACVRDYKRLLAEALPEETIQKEDPDGRIPLDSWTAAKGLMREDARLKRLPKVEREPLYRQYTEDVRKRLNLPPGANYVRDRGPAGARPPAAEPRRETYREHRDKRPRR
Length755
PositionUnknown
OrganismKlebsormidium nitens (Green alga) (Ulothrix nitens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Klebsormidiophyceae> Klebsormidiales> Klebsormidiaceae> Klebsormidium.
Aromaticity0.06
Grand average of hydropathy-1.112
Instability index46.40
Isoelectric point8.69
Molecular weight84767.04
Publications
PubMed=24865297

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13685
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     430.44|      67|      67|     414|     480|       1
---------------------------------------------------------------------------
  293-  332 (35.36/15.50)	..................AAVAE....QRQ...KK.......AEEAsvpDR....ANGESAVG...........................TIKKK.LHE...EDAIA
  333-  412 (68.40/37.80)	EVGKETPPE..KDGKD..EEGNG....AEQKQSE........KEKL........AADFKEMLK...EkkvppfakwdkelpkifaDPRFKAIATTaERRALFDRYVK
  414-  480 (111.60/66.96)	RAEEERLEK..REALR..AAMNG....FRELLDEV.......AEEL...DHTVTYADFETMKG...D..................DPRFKALEKK.ERETLLNERIA
  484-  546 (86.15/49.78)	KAEEERLRK.eREA.....AVTA....FHELLAEK......gANE......TTKWATLKEEVR...E..................DPRYKAVARN.EREQVFNDFLA
  573-  626 (65.83/36.06)	R.EEEELER.iRTKARqkDALDS....YKAILAQK.......VKEA...D..ATWADWR............................R..RIEKE.AEE....KQVT
  628-  704 (63.09/34.21)	HLEAKELEHlfKEHVR..GIMDAcvrdYKRLLAEAlpeetiqKEDP...DGRIPLDSWTAAKGlmrE..................DARLKRLPKV.EREPL......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     165.35|      20|      20|      93|     112|       2
---------------------------------------------------------------------------
   20-   42 (27.41/ 7.15)	PLggSSGPPPTGqP...GAPFGQPAR
   52-   74 (29.46/ 8.23)	PF..LRPPPQHL.PmqqPQGLAPPSS
   85-  102 (29.16/ 8.07)	....TAGPAPQR.P...PQQFSLPPR
  103-  122 (43.51/15.62)	PF..SPGPPSNF.R...PPVWGLPPR
  126-  143 (35.80/11.56)	PL..QQGPPPAF.A...PG..GRPPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      55.54|      13|      15|     162|     174|       3
---------------------------------------------------------------------------
  162-  174 (22.81/13.19)	GP.RLQGASTGVNS
  178-  191 (17.03/ 7.75)	GPgELNSTQGGAGS
  194-  203 (15.70/ 6.50)	G....QKAEAGKDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.66|      12|      45|     230|     241|       6
---------------------------------------------------------------------------
  230-  241 (24.11/16.93)	YYYNSVTGESTY
  278-  289 (25.55/18.34)	YYYNTTTQETSW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13685 with Med35 domain of Kingdom Viridiplantae
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