<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13680

Description Putative CBF-pathway associated protein
SequenceMAEVMEEGNAVLLDIIIGRAARARGGGQPNATLAWCERTNLIAAAGSWEDSSKQKKPASDSQDPHTQLRIHIIDPEAPATHAIVSENAPPSSGPICQLDWSPAGCSPALLCVQSEGACTVLTPPAYAPQTIDAWRPATQWSDQEALRLAKWLQPPSPYSWPATSSSGPYEERFMASSPAPLPRWPRSGFSCLVTLTQSGSAKLHYQTFGRDPQTGQVAWKSTNSVLLACGGESLVADATVTTAGSVLIALVPTSQPSTVVLWELLPQNAHTQPPPPSTGTSSLSPLIATLLRPPRPNESKPEPPLSATIVSSFSVEEGGGHTRRIAGLAFERGTGGEGLVVLTAGVDGDDLASLERWRSSAEPLEVHEVFRSGKDVKEGQESVVKWSRTAALELPMGGGAVLGEVGLRFSTTGDQLAIRVAGRTHLFHFRPDFTLENLPTPHLDTPVAVFSPTGSCVAGLFVGAPEERGLVSVGILAALPWDGRERAPGDQKTTDGWDLALSQRCLWGFVTSRFAWDVVPVARKGPGSIAGLGGQVDRQLHAMPGERLRKDYARKLDRLKTRLLGGAVGPENRAVSLETRIRLVLECLTRALLLLLTRASPNEPGREGEEGYSELEGWCQDSILDLASLFLHLMRRNVEVFIAHQAAAYSPAEKRPSVEVAFPGLPGTRLVGDRGFLEGLLKATSGAHVLRKRRDDRERGAGEGPLRKSGQGNGGVGYHTQEITALLAVVQDLTKRTLALPAMFPPTPPLPKFMALHYADGWSSVGWEEVNKAIQAVGNTLPRPLGADSVGMLLRNLDVLVSWELPADEYSPGLVNSVPDQSYLVKMGSAMLGTGPGESAREVGRKRRRAEHAIATGKGSAGALRAIVGSRRDQLDFRWKPTATKGMVWCGGCGKSTACLYLEGSEEGDPDRAQKWRASWGANWATRCPLCLGCWHPAF
Length939
PositionTail
OrganismKlebsormidium nitens (Green alga) (Ulothrix nitens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Klebsormidiophyceae> Klebsormidiales> Klebsormidiaceae> Klebsormidium.
Aromaticity0.06
Grand average of hydropathy-0.238
Instability index51.36
Isoelectric point7.01
Molecular weight100670.15
Publications
PubMed=24865297

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13680
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     160.82|      32|      34|      98|     130|       1
---------------------------------------------------------------------------
   78-   99 (23.03/ 7.97)	.......PATHA..........IVSENA..........PPS.SG.P...IC.........qLD
  100-  132 (56.91/39.09)	WSPAGcSPALLC..........VQSEGACTV.....LTPPA.YA.P...QT..........ID
  134-  175 (20.05/ 6.07)	WRPAT..................QWSDQEALrlakwLQPPSpYSwP...ATsssgpyeerfMA
  176-  218 (29.82/13.27)	SSPA...PLPRW..........PRSGFSCLV....tLTQSG.SA.KlhyQT.fgrdpqtgqVA
  219-  258 (31.01/14.14)	WKSTN.SVLLACggeslvadatVTTAGSVLI.....ALVPT.SQ.P...ST............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     580.81|     143|     147|     294|     440|       2
---------------------------------------------------------------------------
  294-  422 (191.52/108.34)	............................................................PRPNESKPEPPLSA....tivSSFSVEEGGGHTRRIaGLAF............................................ERGTGGEGLVVLTAGVDGD...DLAS..LER..W..RSSAEPLEVHEVFRSGKDVKEGQ........ES...VVKWSRTAALELPMGGGAVLGE....VGLR..FSTTGDQLAIRVAG
  423-  565 (114.25/56.11)	RTHLFHFRPDFTLENLPT...................................................................................phldtpvavfsptgscvaglfvgapeerglvsvgilaalpwdgrERAPGDQ......KTTDGW...DLAL..SQRclWgfVTSRFAWDVVPVARKGPGSIAGL........GG...QVDRQLHA...MP.......GE.....RLRkdYARKLDRLKTRLLG
  573-  686 (119.27/58.92)	RAVSLETRIRLVLECL.T.................................rallllltrASPNEPGRE................................................................................GEEGYSEL.EGWCQDsilDLASlfLHL..M..RRNVEVFIAHQA..AAYSPAEKR........PS...V....EVAFPGLP..GTRLVGDrgflEGLL..KATSG.........
  687-  878 (155.77/79.37)	.AHVLRKRRDDRERGAGEgplrksgqgnggvgyhtqeitallavvqdltkrtlalpamfpPTP....PLPKFMAlhyadgwSSVGWEEVNKAIQAV.GNTL............................................PRPLGADSVGMLLRNL..D...VLVS..WEL..P..ADEYSPGLVNSVPDQSYLVKMGSamlgtgpgESareVGRKRRRAEHAIATGKGSA.GA....LRAI..VGSRRDQLDFR...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.76|      19|      34|     879|     899|       3
---------------------------------------------------------------------------
  879-  899 (35.66/22.06)	WKptATKGMVWCGGCGKSTAC
  916-  934 (42.10/20.32)	WR..ASWGANWATRCPLCLGC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13680 with Med16 domain of Kingdom Viridiplantae
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