<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13675

Description Reduced epidermal fluorescence 4 related protein
SequenceMAPSAEPSEQGLSELLQDSLQRGDDALLFVADVVDLCNAEQRALPAAVVADLLLGAMCGSDQDWRTAQSYLLHALAAGLAPAKYTLTALMKRASELKAQKPQVFLACLHILEEFLPATCARREAANPASREGGTDPPSVIDFLVSACTFLLGGVLPGDGGEQQAVLLGGPEEHDIVRVALRTLHALLEGRKTGGLLRMARKVSPPAWAQLSGALERLAPSSAGLPWEEKQLADTVLAAWGTVQSPPSAVCGMVVAMQAAHDGWRPWTVGAAKAWLPLEIMLEDCVEGKRLPPTTTADALAGLLRVVRSVEGASWLDTLLALWLAALRSVQRGHEEPFHTETRLSLLLAVVPMAIQAVSAPPAPAAPALDPAAAFLVDSIQQDLVASLDLLHQFPLLLPPPPAASAAAARLSPSLMGVPPPSPRAGSALGAMSPLPSPAVGFHSNPPGATPPESSTSSDNAGSLRDLIVDVCTARNLLPPSETDPVDPPPAEPPPGRWRSGKGPWEQLMAGAPLTASLRAAILASPASRQDQLERVYHIAVAGTDVDEQAAAASTLCGASLVRGWAIQEHAVRLSVQVLTPPRREEPNRPESASLTSPFRYLVNFAPMLFAALAALSQADTLEIVRLHGQLPHLAAALLPICDVFGDMPAGSPSSADTADDLLMYSIFSQAFLLLTRILETFAPPLSAPESQSGLTLPALLDLAGATPSPVLPAPTLSQFPRVAAWYRQHQGFSRPTLGDAWQPRATEQLLRMLFPADRSAGAQPVLASAWDVIAAAPELGQALLAACASNRLPAKDLAQGLRSLLVYLPAAAVPLARFFTAEVVRGAWPAAVLNGTEWPSPASRLPAMEADITALLRQAAVGGPAEAGDTATVASWGNAVPSLPLPLAAGLSLVLASTSDMSHAVASALVVPLLRCAAGQPWPTLAVVAALVAPVLRQGAKQLPPTAAALWCGASSARIAKVLETCFRTALHPTLERPSGITSFLGESRLFGSRGPTALPPGAMYIRAVPHCSGAAAIASAIAAHVLAQASGRSGASGPGRESRGAPEGVSLAAKRLRCRHDPLREAVPTLTQAASLGAALLAMAGRDAVRALFVTALPPLLTETAGSSDRKGGFRPYALARLAVLGGLLAWGQSPGQLDRQALEEHVEFLVGSGTQLSPWSTASLGRAYVVAFTSFMVGYAPAWLSELGNQSLMKLSRFLADIGSRDLALAVLDCGSWPNAAASVELVIG
Length1231
PositionTail
OrganismKlebsormidium nitens (Green alga) (Ulothrix nitens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Klebsormidiophyceae> Klebsormidiales> Klebsormidiaceae> Klebsormidium.
Aromaticity0.05
Grand average of hydropathy0.214
Instability index53.43
Isoelectric point5.81
Molecular weight128147.97
Publications
PubMed=24865297

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13675
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.96|      33|      35|     393|     426|       1
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  397-  434 (56.96/15.50)	LPPPPAASAAAARL..SPSLMGVPPP......SPRAGSalgamSPL
  805-  845 (32.00/ 7.31)	LVYLPAAAVPLARFftAEVVRGAWPAavlngtEWPSPA.....SRL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     213.84|      46|      73|     273|     318|       2
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  248-  295 (55.61/21.91)	..AVCGMVVAMQAAhDGwRPWTVGA...akAWLPLEIMLEDCVEGKRLPPTTT
  296-  339 (64.15/26.40)	ADALAGLLRVVRSV.EG.ASWLDTL...laLWLA...ALRSVQRGHE.EPFHT
  340-  364 (36.55/11.88)	ETRLSLLL......................AVVPMAI...QAVSA...PPAPA
  906-  948 (57.52/22.92)	ASAL..VVPLLRCA.AG.QPW.PTLavvaaLVAP..V.LRQG..AKQLPPTAA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     280.86|      52|      93|     485|     541|       3
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  202-  247 (42.97/ 7.02)	VS.......................PPAWAQLSG.ALErlapSSA..GlPWEekQL...........ADT.VLAA..WGTV.QSPPS...........
  485-  536 (99.09/26.90)	VD.......................PPPAEPPPG.RWR....SGK..G.PWE..QL.M.........AGA.PLTASLRAAILASPASRQDQLE..RVY
  577-  627 (57.10/12.03)	VL.......................TPPRREEPN.RPE....SASltS.PFR..YL.V.........NFA.PM...LFAALAA..LSQADTLEivRLH
  658-  722 (41.40/ 7.31)	ADdllmysifsqafllltriletfaPPLSAPES....Q....SGL..T.LPA..LLdL.........AGA...TPS...PVL..PAPTLSQFP..RV.
  729-  784 (40.29/ 7.49)	.H.......................QGFSRPTLGdAWQ....PRA..T...E..QL.LrmlfpadrsAGAqPVLASAWDVIAAAPELGQALL......
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.86|      19|      20|    1067|    1086|       4
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 1067- 1086 (26.80/19.15)	AVPTLTQAAsLGAALLAMAG
 1089- 1107 (32.06/18.46)	AVRALFVTA.LPPLLTETAG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.02|      14|      20|     166|     179|       5
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  166-  179 (24.40/17.40)	LLGGPEEHDIVRVA
  186-  199 (23.62/16.55)	LLEGRKTGGLLRMA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.11|      14|      20|     540|     553|       6
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  540-  553 (22.12/11.97)	VAGTDVDEQAAAAS
  561-  574 (25.00/14.51)	VRGWAIQEHAVRLS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.50|      12|      21|     864|     875|       9
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  864-  875 (20.30/ 9.80)	PAEAGDTATVAS
  886-  897 (19.20/ 8.82)	PLAAGLSLVLAS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.27|      22|      72|       1|      46|      10
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    3-   27 (34.07/49.04)	PSAEPSEQGLSELLQdslQRGDDAL
  978-  999 (40.20/ 8.69)	PSGITSFLGESRLFG...SRGPTAL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13675 with Med33 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AARLSPSLMGVPPPSPRAGSALGAMSPLPSPAVGFHSNPPGATPPESSTSSDNAGS
2) LLPPSETDPVDPPPAEPPPGRWRSGKGPWE
407
476
462
505










Molecular Recognition Features






MoRF SequenceStartStop




NANANA