<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13661

Description Uncharacterized protein
SequenceMGVLSESSKRRQIIFVVDASTALSGIFKHLLTDYIVPCIEFFNGGPVAESNAGAQCVNYYGVITIKPLALFSVPSCNYFPLTSSPSDLLQNLHNICFEGNMIEHCCRASEGLAAALEFMELTKSIVIGNSDSNEIEKYCIFISNLPPSSMPVMESVTYGNMSYMQLAEEMAKNNVSLSVITPRWLIPYADLFVKGALSPPYDNSILTHADHALHPGCMVLLRGLDVPSLKARKVKIEPDPLPPSSSSSVSQDPSLMASGLEEIKGEISGPPSISQPPSIPSLPPPSIPPDSVVNPLSVPPISNLDAPPTTALPPAIRKTSSVSSLYDVQSSSYPGLKSLSPNGVSPSNPASVPATISSHPDLDKPPLGIPSSLSSSPQTGAVPLTSVSPQRPSISSSSSFLSVNASNPSYKSVSTVSSGTTGFTDATAPIGSSTNPIQIISSPGVENKPFTMSSVPSATGTTPSTLYTQSSSSTTASSLTTLLSSSSSSSVPISFNSDVPPVGGVGGGASDSNVTTSSSSIPTAAALTAQQIVIEAARQAAKGLPSQGTPGIPRPFGGVTTSLPSGGLPSSNPINTGGFTSFPSSTAGGFGGPIGGGGGQGMMPSGGQGPMQSLNGGGTMNSGQGAMVGPVAPNQSSMASNQVPMAPNHQGGIGSNQGQIGPGQGQMGPVQGQMGPGQGQMGPNQGAIGAGSVGGMQQMGSQQQAMGGGQTNIGAQPGQPAIPQFVKIWTGYIEVAEPRQQRMQPRQIQCHMLANKPMENKAELKPELWPQKILMSVHLKTVFNAINSIYRINQAALRVVQFQFMEPAQNVYYLRALQSNDAQNKKIAIVKIPITNANPQCPIKAFFIIWNEKTRQFTGLIPLDQDTFVMALKQAMKIQQQQQMAGGNPGMQMGGAGGGAGGGAYMPQQQQQGGGGGGGGGLQHTGGGMGPGGGGYPQQTTSQQQMFGGQQSFNQAPPTSTMHQLPASTAPMTASMGFNSSQGGTSSVQPPSASGGISHQSMNSMTAPPISSNSMVGGAGGGAPTSNQQQMLNALQNNEKFRIAYENANPEQKQAFLNKLDLKHFQFQQQQQQQQQQYQQQQQQFQQQQQQSYQPGGGQYPPPTQNMYNMSSNQMPQSMGMQHVPGPQQMVRQGGVVPQSQYPAGSGTAPNDLFTL
Length1156
PositionUnknown
OrganismAmphimedon queenslandica (Sponge)
KingdomMetazoa
LineageEukaryota> Metazoa> Porifera> Demospongiae> Heteroscleromorpha> Haplosclerida> Niphatidae> Amphimedon.
Aromaticity0.06
Grand average of hydropathy-0.315
Instability index62.88
Isoelectric point7.59
Molecular weight120257.97
Publications
PubMed=20686567

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13661
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     155.48|      26|      27|     650|     675|       1
---------------------------------------------------------------------------
  662-  689 (49.98/13.20)	PGQGQMG.PVQGQMGpgQGQ..MGPN.Q...GA..IG
  900-  930 (36.30/ 7.52)	AGGGAYM.PQQQQQG.gGGG..GGGGlQhtgGG..MG
  931-  954 (35.88/ 7.35)	PGGG..GyPQQT.TS..QQQ..MFGG.Q...QS..FN
 1095- 1120 (33.32/ 6.29)	PGGGQYP.PPTQNM......ynMSSN.Q...MPqsMG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     253.04|      41|      41|     241|     281|       3
---------------------------------------------------------------------------
  238-  274 (58.68/17.43)	.PDPLP............P.....S.SSSSVSQD..PSLMASGLEEIK..GEISGP......P..SIS
  275-  305 (41.28/10.02)	QPPSIP....S.....LPP.........PSIPPD..S.........VV..NPLSVP......PisNLD
  306-  347 (43.70/11.05)	APPT.T....A.....LPPairktS.SVSSLYDV..QSSSYPGLKSLS..PNGVSP...........S
  348-  395 (37.62/ 8.46)	NPASVPatisShpdldKPP....lG.IPSSLSSS..PQTGAVPLTSVS..PQ...R......P..SIS
  572-  607 (34.43/ 7.10)	NP.......................iNTGGFTSF..PSSTAGGFG.....GPIGGGggqgmmP..SGG
  989- 1027 (37.33/ 8.33)	QP................P.....S.ASGGISHQsmNSMTAPPISSNSmvGGAGGG.....aP..TSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.63|      11|      17|    1066|    1076|       4
---------------------------------------------------------------------------
 1066- 1076 (23.26/ 9.47)	QFQQQQQQQQQ
 1084- 1094 (23.37/ 9.54)	QFQQQQQQSYQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     129.47|      27|      27|     416|     442|       6
---------------------------------------------------------------------------
  416-  442 (41.73/17.84)	VSSGTTGFTDATAPIGSSTNPIQII..SS
  443-  471 (34.67/13.48)	PGVENKPFTMSSVPSATGTTPSTLYtqSS
  472-  497 (29.24/10.13)	SSTTASSLTTLLSSSSSSSVPISFN..S.
  502-  522 (23.82/ 6.77)	VGGVGGGASDSNVTTSSSSIP........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.65|      26|     208|     814|     847|       8
---------------------------------------------------------------------------
  814-  847 (32.53/46.18)	LRALQSNDaqnkKIaivKIPITNANPQcPIKAFF
 1032- 1057 (47.12/32.86)	LNALQNNE....KF...RIAYENANPE.QKQAFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      54.47|      11|      29|     119|     129|      10
---------------------------------------------------------------------------
  119-  129 (17.30/ 9.83)	MELTKSIVIGN
  150-  160 (19.76/12.29)	MPVMESVTYGN
  164-  174 (17.41/ 9.93)	MQLAEEMAKNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.75|      18|     175|     693|     714|      12
---------------------------------------------------------------------------
  693-  710 (34.56/19.82)	VGGMQQMGSQQQAMGGGQ
  730-  747 (32.20/ 9.35)	TGYIEVAEPRQQRMQPRQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13661 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AARQAAKGLPSQGTPGIPRPFGGVTTSLPSGGLPSSNPINTGGFTSFPSSTAGGFGGPIGGGGGQGMMPSGGQGPMQSLNGGGTMNSGQGAMVGPVAPNQSSMASNQVPMAPNHQGGIGSNQGQIGPGQGQMGPVQGQMGPGQGQMGPNQGAIGAGSVGGMQQMGSQQQAMGGGQTNIGAQP
2) ISFNSDVPPVGGVGGGASDSNVTTSSSSIP
3) QQQQQMAGGNPGMQMGGAGGGAGGGAYMPQQQQQGGGGGGGGGLQHTGGGMGPGGGGYPQQTTSQQQMFGGQQSFNQAPPTSTMHQLPASTAPMTASMGFNSSQGGTSSVQPPSASGGISHQSMNSMTAPPISSNSMVGGAGGGAPTSNQQQMLNALQNNEKFRIAYENANPEQKQAFLNKLDLKHFQFQQQQQQQQQQYQQQQQQFQQQQQQSYQPGGGQYPPPTQNMYNMSSNQMPQSMGMQHVPGPQQMVRQGGVVPQSQYPAGSGTAPNDLFTL
4) RKVKIEPDPLPPSSSSSVSQDPSLMASGLEEIKGEISGPPSISQPPSIPSLPPPSIPPDSVVNPLSVPPISNLDAPPTTALPPAIRKTSS
5) SSYPGLKSLSPNGVSPSNPASVPATISSHPDLDKPPLGIPSSLSSSPQTGAVPLTSVSPQ
6) TTGFTDATAPIGSSTNPIQIISSPGVENKPFTMSSVPSATGTTPSTLYTQSSS
536
493
879
232
331
420
717
522
1156
321
390
472










Molecular Recognition Features






MoRF SequenceStartStop




NANANA