<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13660

Description Uncharacterized protein
SequenceMEVISGEMERTLKRHLERDTFLSTFQCCTESVIIPDTFVNSSLLEGVRLVITNSVPEQLLFHIKEYVKYMINQTNPHCVELLSDTMETLVNRSSLIPARAVCEVVLSEISTNNLMTWKQGLTLIHNIIGAVDYKGCRDVMKLLLDKFDAFPRSIPEKLMPAIHSGRKILNYILDRNASLMPSYMAHDEIQRRYSAPETHPHWALKDIIASLKGGMEVVAGLVSGNMLPNLVPVIGCSNTAGNAWKLDQDKTCFSLPGRLPYSQCLLKTQYELLYRVLAQPQSKEIVVSMFNNGKQPHIQSVLLECIVRLLVEATKATDSWDIVDSAVNLIWSHLVNTVLYMAALQLVNFNSIISELKNKLTGHVLTRGRGYLMWFILSMLTGSVQHETTKREHELYSGLIGTLYTETEPLPLPNMESMSSVYQFAAPSVWLMLNKKVEPGVVIADPPVAIQHHVEFIRNQFSSLSPETPPTPLIMVILLNSFHTTGDTYTMLLSMILNTSEHPLSQDCINLMVLHAKTRLGEKIRVQLMRAAESSKHQQQVQQENNKNMITAGLLETYSHLLLWLGTKLFQSQLIPMVFKVQEWSMLQNLLELISNRIHSQLQISSRFNILILLHSIAGVCIIPTQLFIGAENTSLYLIMGLAEGEMLPLQLGKMSNEPKTLFHADSDELNKTLILSLAQSLTLSRVDLSNWLDKLFKDLEPAVFQWPESSLQFLPGVLKQRCHTPSHDNIRLLLVKRIEEEYQKLNSTSEQVLQQYYSEGDNSTYLFCVLWKQFLTTGQITPLVSRLLQRLRLSPKRQVSDLRRLIDYIVYTCPSPSTPSNNDFMHVVSCLDSLVWKYFLYPLDRLLLCIIWRYHNKQDTVTVMMLTYHLLMSDSVLNRLTHFLDTMPHWSDAEWGQKHSEYLSSFPECFTFDTSGTATCSNNSTMNMIFGNVCLRLLPIIDLVIQRMLEVPLSYQSLLEPLLNKYKGLYRYHKSPVSFLYRMLHYYSPSLIDVPQVKEQLVSSILGSLSPEQLSHEMMFSTLFKNTVIEKKQEIGEGPSSEYWQELLIQINNAMTPFKNPSVSHLSWPLSEFTNPVSSLVMSAALEIMSFSLPIKALIHTLLNTLLAEYTSSSTPSQQSIELLNVAGSLLAILPDSYSTFFYEELFTFLMSSPFKESVSMEAFVEGTQARFLLNFSHSFLHHSNISVIGGLLTWLQIRLKPHITTEAQLLFLCHLLAPALNRLASEKPTLLMQVVIELYQLIKQVDSAQEGSITNCAPICDLMYHIKYMHIGDYKKEVLEGIILSLHPSMRLMLRFLVQSTTAGAALTPVMMAPPTQDLTPMH
Length1325
PositionTail
OrganismAmphimedon queenslandica (Sponge)
KingdomMetazoa
LineageEukaryota> Metazoa> Porifera> Demospongiae> Heteroscleromorpha> Haplosclerida> Niphatidae> Amphimedon.
Aromaticity0.08
Grand average of hydropathy0.059
Instability index49.12
Isoelectric point6.29
Molecular weight150537.57
Publications
PubMed=20686567

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13660
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     128.35|      34|      34|     624|     657|       1
---------------------------------------------------------------------------
  624-  657 (59.04/36.30)	PTQLFIGAENTSL..YLIMGLAEGEM..LPLQLGKMSN
  659-  691 (44.77/25.59)	PKTLF.HADSDELnkTLILSLAQS....LTLSRVDLSN
  693-  716 (24.54/10.41)	LDKLFKDLEPA......VFQWPESSLqfLP........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.67|      31|      36|     993|    1027|       3
---------------------------------------------------------------------------
  993- 1027 (43.01/37.96)	IDVPQ.VKEQLVSSILGSLSPeQLSHEMmfsTLFKN
 1030- 1061 (51.65/31.29)	IEKKQeIGEGPSSEYWQELLI.QINNAM...TPFKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.97|      10|      58|     403|     412|       4
---------------------------------------------------------------------------
  403-  412 (19.41/ 9.04)	LYTETEPLPL
  464-  473 (20.56/10.01)	LSPETPPTPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     131.06|      33|      34|     272|     304|       6
---------------------------------------------------------------------------
  272-  304 (53.87/35.02)	LLYRVLAQPQSKEIVVSMFNNGKQPHIQSVLLE
  309-  336 (44.33/27.48)	LLVEATKATDSWDIVDSAVN.....LIWSHLVN
  338-  364 (32.85/18.41)	VLYMAALQLVNFNSIISELKNKLTGHV......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.70|      25|      34|    1130|    1154|       9
---------------------------------------------------------------------------
 1130- 1154 (42.21/30.67)	SLLAILPDSYSTFFYEELFTFLMSS
 1161- 1185 (43.49/31.87)	SMEAFVEGTQARFLLNFSHSFLHHS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13660 with Med23 domain of Kingdom Metazoa
Unable to open file!