<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13654

Description Uncharacterized protein
SequenceMTCTALCLKGCGTSPSSLVTTPAPGSEFMLDVTSESRDKNWPIELIVMLHTDNSITVLNRTSYQVLCNYKLGGGDGEPGAKRLKTEGDWGGAAGGVVNGDCNICISPNGGCVAVATEGVINVIAFSPFFLGEKGFESPDISRWSLLLALAAVKNVSVWDIAVMCSRVSYRHKDGGLIMKVLEQWGKDFTRNSDTWRDTLLPVYYRICLTLHCCHDHGLTHALDQRDVLRLHSTFSLFLLSLSSNKESDSSLAYSLKDCAESPEDNIDAITRSLQNKDFEIDKDIASELQVHAHWIIEFSLKVSSRIANLMVGRYPDRLSLKVLRQCLMLIFIWNKVLKMPVLSISDSSLSLLFKVITCTINNEMNVLDESLKSDLLRNIPPMESYSTLTLTKAANLQGFLHGLSKTAELPETFYRETPPRLRPHVQANYSSYDPYSPLGLVVPKGISPPWRDRFIEGQLDVIHGGILTNAVLRDTKLRQCSNCRSWTVVSGTSSVDPATPSSLSSPIQQWRHSWTRHCLCGSMWLHTKQ
Length529
PositionTail
OrganismAmphimedon queenslandica (Sponge)
KingdomMetazoa
LineageEukaryota> Metazoa> Porifera> Demospongiae> Heteroscleromorpha> Haplosclerida> Niphatidae> Amphimedon.
Aromaticity0.08
Grand average of hydropathy-0.100
Instability index47.11
Isoelectric point6.93
Molecular weight58758.77
Publications
PubMed=20686567

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13654
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     226.68|      75|      99|       3|      90|       1
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    3-   90 (116.61/115.18)	CTaLCLK...GCGTSPSSLVTTPAPGSEFMLDVTS.ESRD.KNWPIeLIVMLHTDN....SITVL.NRTSYQvlcnYKLGGgdgepgaKRLKTEGDWG
  101-  185 (110.07/74.97)	CN.ICISpngGCVAVATEGVINVIAFSPFFLGEKGfESPDiSRWSL.LLALAAVKNvsvwDIAVMcSRVSYR....HKDGG.......LIMKVLEQWG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.31|      45|     247|     192|     251|       2
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  192-  243 (73.23/56.74)	SDTWRDTLlpvyyrICLTLHCCHDHGLTHALdQRDV.LRLHSTF.SLFLLSLSS
  447-  493 (75.08/40.43)	SPPWRDRF......IEGQLDVIHGGILTNAV.LRDTkLRQCSNCrSWTVVSGTS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13654 with Med16 domain of Kingdom Metazoa
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