<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13643

Description Uncharacterized protein
SequenceMDSGFIDALSQKREKVEDLFEYEGKKIGRGTYGHVYKAKKRSGDDPKEYALKQIEGTGISMSACREIALLRELKHSNVISLQRVFLSHADRKVWLLFDYAEHDLWHIIKYHRAVKGGKKPQVQVPKTMVKSLMYQILSGIHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADMGFARLFNAPLKPLADLDPVVVTFWYRAPELLLGAKHYTKAIDIWAIGCIFAELLTFEPIFHCRQEDVEASSPYHREQLERIFLVMGFPHDRDWDDMKHMPEYSTLMRDFGRQKANFANCALQKYMDKHNVKHDTSAFKLLTKFLVMDPNKRITSDQAMLDTYFTEEPSHTSDVFSSMQIPYPKRKFIFDGEPSKEEKPDPHKVMSQSFLLLVLLMNL
Length392
PositionKinase
OrganismAmphimedon queenslandica (Sponge)
KingdomMetazoa
LineageEukaryota> Metazoa> Porifera> Demospongiae> Heteroscleromorpha> Haplosclerida> Niphatidae> Amphimedon.
Aromaticity0.11
Grand average of hydropathy-0.396
Instability index42.05
Isoelectric point8.74
Molecular weight45494.16
Publications
PubMed=20686567

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13643
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.05|      23|     171|      81|     110|       1
---------------------------------------------------------------------------
   81-  110 (37.87/29.09)	LQRVFL..SHADRKVWllfdyaeHDLWHIIKY
  253-  277 (42.19/19.71)	LERIFLvmGFPHDRDW.......DDMKHMPEY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.76|      15|      35|     152|     166|       2
---------------------------------------------------------------------------
  152-  166 (27.05/15.95)	DLKPANILVMGDGPE
  190-  204 (28.71/17.30)	DLDPVVVTFWYRAPE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13643 with CDK8 domain of Kingdom Metazoa
Unable to open file!