<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13600
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MKAQLLTVSLRELQQRYPLDGKAIATLLVSFRARPSGMNEPLFYSYATLFLKDKLITSADLLLALFDSSVARSGHSGNPISTRTFGQPCYEERMFTIMTQIHLSTELPSSAIDVHSLVHAVVKWLHHVCEYEMGRQLEGAGIDTMHPCSLGAYEALGSLAISILGNQGIRNVAKQSWWRAGRAQIVEEMQNYDANILQWMQSQLAGRLRALTGMPPYIKTDGKGRPVLTDDQILEAIPEVPTMNSRAGLFLWLNAALAARPLTDDMTLLGYLHARYPGNVQSLIVDLLVASFDNLTNAMLRKEIRQNVKVIRSFICNKLPTLIAMLCGSIGEQITPEACIQMALIPGGLISMTPLPPISNGATDIEESLKGTRLEFLQACALHGLVAESTIAAILRGPIALPRVTKYSKETLVAQCANNPSRLAPLIDDLNGMQGNAGAISGCVVETISNLCMSKDTMSLKTVCNELIKRIAYMDVVMQYTQPQMLLLPLCNLLNEWMHDQDQTEFTPSYEEFASILLLTLATMHRYEIQWPDIGVLEDSFIARLLDDMSCSKPPSELPDEQGSQLAKWIEGLFAVDDSGETIGIGDDVMRQCSPQNFYLLVPTLFEQSVLACRSNALAINTFKGGLELLLEPFLLPSLIMGLGWLVEHSWEDHNDVDLLLQVLEKLLKPSSTSQETQAMHRTILSMVATPWHDSLQELQRRQPDKKKVAELSALLTPYLSNQRTLSCRRSELNDWIQNEGALKARVQQSLRELIRWASTSTNPPDPPPRYAHKLFAVACQALSPEKLLSIILGEITATDFSTIPTALDVCASMICAPTALSAATHQPGSAIALSPVRTLRNHIRHLVSEPQALLTRLQRNAEALVQLSRRIESQLSIAQMPALTIPLQMQDQAADQMMQDLGLDIPATGDANNNAIGAGASGSIDLGPEFAGLSGISQSQAQELVELANADGASGTAAGGMDLGDQGVFGGLLDMNSGTQGDGSGGQEGSQGGMNNDDDIFAGLDMIGDFEMD |
Length | 1014 |
Position | Tail |
Organism | Zymoseptoria tritici ST99CH_3D7 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Dothideomycetidae> Mycosphaerellales> Mycosphaerellaceae> Zymoseptoria.
|
Aromaticity | 0.05 |
Grand average of hydropathy | -0.021 |
Instability index | 47.42 |
Isoelectric point | 4.95 |
Molecular weight | 110610.76 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP13600
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 121.81| 25| 30| 952| 976| 1
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918- 937 (32.06/16.03) .GA.G...ASGSIDLGPE..FAGLSGI
952- 976 (49.44/28.73) DGASG..TAAGGMDLGDQGVFGGLLDM
983- 1007 (40.31/22.05) DGSGGqeGSQGGMN.NDDDIFAG.LDM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 106.08| 32| 35| 197| 231| 2
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197- 231 (50.43/41.52) LQWMQSQLAGRLRAltGMPPYIKTDGKGRPvLTDD
234- 265 (55.65/34.84) LEAIPEVPTMNSRA..GLFLWLNAALAARP.LTDD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 198.65| 83| 359| 356| 454| 3
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320- 423 (117.00/88.48) PTLIAMLCGSIG..........EQItPEACIQ.........................................................................................................................................................................................................................................................malipgglismtplPPISNGATdieESLKGTRL.EFLQ.ACALHGLVAEStIAAILR......GPIALPrvTKYSKETLVAQC.ANNPSRL
424- 454 ( 1.76/ 9.98) APLIDDLNGMQGnagaisgcvvETI.SNLCMS....................................................................................................................................................................................................................................................................................................................................................
718- 788 (79.90/43.74) ................................kdtmslktvcnelikriaymdvvmqytqpqmlllplcnllnewmhdqdqteftpsyeefasillltlatmhryeiqwpdigvledsfiarllddmscskppselpdeqgsqlakwieglfavddsgetigigddvmrqcspqnfyllvptlfeqsvlacrsnalaintfkgglelllepfllpslimglgwlvehswedhndvdlllqvlekllkpsstsqetqamhrtilsmvatpwhdslqelqrrqpdkkkvaelsalltPYLSNQRT...LSCRRSELnDWIQnEGALKARVQQS.LRELIRwaststNPPDPP..PRYAHKLFAVACqALSPEKL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 67.45| 22| 32| 814| 844| 4
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814- 835 (37.47/42.60) MICAPTALSAATHQPGSA.IALS
847- 869 (29.98/12.20) LVSEPQALLTRLQRNAEAlVQLS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 78.85| 26| 224| 290| 315| 5
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290- 315 (45.75/35.32) ASFDNLTNA.MLRKEIR.QNVKVIR.SFI
514- 542 (33.09/23.35) ASILLLTLAtMHRYEIQwPDIGVLEdSFI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 37.01| 10| 24| 458| 467| 6
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458- 467 (18.38/10.32) MSLKTVCNEL
485- 494 (18.62/10.55) MLLLPLCNLL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 61.12| 18| 683| 9| 27| 8
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9- 27 (28.76/20.78) SLRELQQRYPlDGKAIATL
695- 712 (32.36/18.93) SLQELQRRQP.DKKKVAEL
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