<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13548

Description Uncharacterized protein
SequenceMATDFWASSHFKRWIFDRATFRQARADDLRYVDDPEHLDFLAIFFANLISKLGKKLQLRQRVIATATVFFRRFYIKNSYCETDPFIVIAACCYVAAKAEELPVHIKNVVSEARQIFGSEEYGVKSFPTDNSKLAEMEFYLVDDLECDLIVFHPYRTLMMLCGKEGSIHVSEAEAGEVGAGIDDGRRFWGTGEGKLELQDGALQMAWWVSPRSLTAHASEQQAAARFIINDTYRTDLCLIHPPHLIAIAAIYLVLVLHNSTRSLIQAQSSSSSSQSVSRSSSHSQLQSQPSTATTPRRSSRSNAAAHRKQPQDIVGFMAGLNVSMAHVATIAQEIIGLYALWDRYREDGTAGSGDSARGVFAQHRPGYSGAKRAAGGESVGRSGSVGSGGTMSSGATPVTSESAEQGQQVVDAGFLIQVLLRMREGRFADMAHPPSGRPVAVNKRLERAQAAG
Length452
PositionKinase
OrganismPostia placenta MAD-698-R-SB12
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Dacryobolaceae> Postia.
Aromaticity0.09
Grand average of hydropathy-0.209
Instability index52.87
Isoelectric point7.72
Molecular weight49513.32
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13548
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.60|      11|      17|     348|     358|       1
---------------------------------------------------------------------------
  348-  358 (19.69/ 9.40)	GTAGSGDSARG
  366-  376 (19.91/ 9.57)	GYSGAKRAAGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.03|      15|      18|     255|     269|       2
---------------------------------------------------------------------------
  255-  269 (24.97/16.45)	VLHNSTRSLIQAQSS
  276-  290 (26.06/17.48)	VSRSSSHSQLQSQPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.70|      11|      17|     119|     129|       4
---------------------------------------------------------------------------
  119-  129 (20.20/12.73)	EEYGVKSFPTD
  137-  147 (20.50/13.01)	EFYLVDDLECD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.40|      29|     185|     204|     242|       6
---------------------------------------------------------------------------
  212-  242 (46.82/46.38)	SLTAHASEQQAAARFIINDTYR......TDlcLIHPP
  400-  434 (44.58/19.91)	SESAEQGQQVVDAGFLIQVLLRmregrfAD..MAHPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13548 with CycC domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GSGDSARGVFAQHRPGYSGAKRAAGGESVGRSGSVGSGGTMSSGATPVTSESAE
2) QSSSSSSQSVSRSSSHSQLQSQPSTATTPRRSSRSNAAAHRK
351
267
404
308










Molecular Recognition Features






MoRF SequenceStartStop




1) LERAQ
445
449