<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13541

Description Uncharacterized protein
SequenceMKRKADTYTDNKKRRLGAPLTSMTNTRYPLSFLFSSMVHRQSPLCLNNSSQGIVVTAPPQPNNASVYSISGDIYAFNNTSSSSSSIKAAATPTIKKTPIRLIENYHKQDTITQLQWNQNGTTLVSADETGKLALWNLENSVQSWSLTYEVNLRQPIAALFWLNADREYVVNRNGKDCVFTREKVLGPRNPFGYLAFIAVTVHGEISVHYQRNGAIFSSFSTTIPKTGHRDISRAETGCYGMALAELDDCRRISHASLNMDKEGNVYLAAYYSESYPKAVDLYNVKIKFPGKSDSGAIFCQPVPSLRFITAPEPTLQPITVPETAITHIVLSNSSQGIVLNIGFGAYDDSKSEYSCYFGKWIIQETTQQIPCNYFDGNSFGDDTISRKRKELKYQSGFALTERIITSVSCTRSGQLGIGLSDGSIHMEYQDRSEFGLLRYTTDDKATSLNSNFWQVVGSHSLEDGFFDPVLGITFSTCETHLIHMLSSGQVGSARLTTNEPNDDADQDTGTITTLEQSIKVSLLNQTDNLDLISELIRIGRLQGHKDVPERVVNNALLAYESFFYQDDINTLQATPGPDLKKDDEISDWNLARSRPAYGLAIGTYRYIPEKRIEFTNMIKAIQLPIILECFMGSCTSDMADITDVLDATVDSKKQLSFNPDSLWSLVSLSSWTFDYVRWILKEWNLLFNSRHPKNSELYDLSARPVHAVLLVHKESRSSLIQILMMIQHFIQYATTSNYELQHIPETKQLLLRHITTTLTSEPVPIKDILSFLQALGNIKHLQKNSNDEGNNESRWSILVSSRLPSGESLDELKKVTAEYRAKCALPAIYLETHKEYPVDVIRKKRIVPSEGHVQSCIRCRQLYLPVIPNAIDPTSFSSWFHSLTRRCVCGGLFF
Length894
PositionTail
OrganismAbsidia repens
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Cunninghamellaceae> Absidia.
Aromaticity0.09
Grand average of hydropathy-0.303
Instability index47.24
Isoelectric point6.53
Molecular weight100520.61
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13541
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.85|      31|     286|      20|      54|       1
---------------------------------------------------------------------------
   20-   54 (50.69/43.68)	LTSMTNTRYPLSFLFSSMVHrqspLCLNNSSQGIV
  308-  338 (54.16/35.61)	ITAPEPTLQPITVPETAITH....IVLSNSSQGIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.45|      11|     119|     635|     645|       4
---------------------------------------------------------------------------
  635-  645 (19.24/ 9.73)	TSDMADITDVL
  759-  769 (19.21/ 9.70)	TSEPVPIKDIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.23|      18|     111|     683|     700|       6
---------------------------------------------------------------------------
  683-  700 (34.57/17.92)	WNLLFNSRHPKNSELYDL
  795-  812 (31.66/15.90)	WSILVSSRLPSGESLDEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.69|      34|     516|     109|     148|       8
---------------------------------------------------------------------------
  109-  146 (51.08/56.53)	DTITQLQwNQNGTTLVSADETGKlalWNLENSVQSWSL
  566-  599 (60.61/40.87)	DDINTLQ.ATPGPDLKKDDEISD...WNLARSRPAYGL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13541 with Med16 domain of Kingdom Fungi
Unable to open file!