<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13540

Description Uncharacterized protein
SequenceMAGRHQAPYPRYPNAGASYGSSNMGNNNMSNNNNLNIPFPPQNNGSMAGSSGSSSGGVNGPYSSAPGSSYSTTPTNTTSPYSTASSPGYHSPNVTKSQHNLPLKKYVLQPPLKLLPYCKATPSLGYPGLFPQRPNQEEDVMSESNMRNGFIEKSLVSNEQTCAHDIIYGKLQDDRRLLNEMGNFMVDVLKRKKKASRITGPSSFKPPTRTTLMELKKEHWIQELANGAVPLRTLSRNVPHGYKGEKLLETLAARQVPFLRATWYIKVVGLSEMAQRNASNSASNSSHAYNWTMIVTGHLKKQLADLVPLPSNSASGSMRGHRNSNVPGVGGVNNDNQVKPWTTSETKARFESRWSYSSKLTRWQYSEGLLDQRNFLKWTLDTLATSGSFEIMWVVLTGIIQDYIDEYRRNRTLTKLLVETLIKAYSAVLQCSKFPTTDTTTSATSNSSNMLTGLKRDIERMIQSLFLSSPDMFVIPKLYHQYRQLFEVILGEQSHIKLTKTVPDICIVMDTYWTMVKARNEVFCGTLEENRLGNSSNNHNMIESSTSKSAATPITNTSADLANSESSKSGHKGNIGTTEGAAVDEEHIVHTLDSIGRYADSGYLLFGNNNTGWTDEKGHSAMTASLVIFSGCTNGSTVHTNLLNQVVQILCRWATCEARHGDWRAFLISSVLLCWRDQDQTTQFKRQGGLQEALMEFLDNQVFTTSRMASTTDTMAAGEDENQGASTTSMIIDGGSGIMDGDQTATEQSSTAAISFLYDTFIRMQLFSYHRYLNRLTARGHLERSQRNRSDVARCLYHLKSLPLLTPAPAHLVNQRRVALYGTRRDNDNESRLELDAIAQLRQLAKQWIMGHATGQQNSTDDTTLFGVNAEDMTEPMVNDTADTFELSLSDKLEQQMRRLMDNSTRYVIIQFTSEWLLNEVKRFVVKNVQIGEDNWRVMTSPGSCLLNARQYVALIKILECAKDYMNVVQLALWVLEKTNERSVLALVIDTLRQYANIWKLMNSGNLVAKTLWDKHQSLQARGIRERCVMIYMVQLIQEGYSVTDDMRLQLQKDLQMRPRVRGRHVQVSIGDELLQVIDNDASKSYVQNAVENLCAAYQYQNGALWVGLVLDGVVDTMQQWIKKTAMYGSSDQGQHHQQQQQQNLTLQRYLCSFADIIKDIADMCTLTGQINDALIDWLSNKASVVEEMRQPQSWLVLFIAHLVSRNLVSLDVIFYRFTLPWFDQVSQHFLRDDALWSTTASTTTADGTSANTGTSSNGSTTDDNANSNQWHHICENMMILIRLLVVQERCYWIQQDGNAMNEVSGAYQQPWVLPADEVFRLETLRYTQLASSLDRIEPMFALMEKLVLIASSLPLSSPLLQELVMLRADLLQIGWFRQACVRDLHGVYRRFSSHGTEASTEKKIKKKILSIVDELIGGTLADMSPGHHHHHHLHHATLVQEPDFIDKIQRIFINVSQWNEEQCRVQVSLLLDNILLSDGGNGQNPNNPHILGGDDITMTNSNDKLEHGDEGGFLVMKRNNNKDLDAFVRFFFSVVLSNEDQQQRRSLFFKNVIHGLRKRVLLELLNYGVRLLEGCDIDANDESLQQDHSSATSPPASQQQQQRVQSPDQNMSSSSSASPPILSSTGNQQQQRISATSTPSPAHHSSLKSFPNNVLLLSSVNECFDSAKYAYKSQAFLNIMQHMMAQNMWGNDKKIDLVKTLYRQIKRFQSGLLAYQVMQDAHTTFAKAVSALDATKNNVASAVSLLATEGLSPEPTDLSVTLDDLRTSLLIRIRLMVPFASLIWEYPKEDECDALSWIWTLVILLGNPIVHGNGSQEQFFEFVLDFVSLIIDEVPPVIRKQTLARLSTLPGEPTTVPAMFQSRVNRILPFSTHNIYLTNSRLATGILGATPTTDPLQQQQHLETCMEQSRPWEWLEDYVSDPPHDNDVPINLGLFRARKSRRMDGTYIRCRT
Length1953
PositionKinase
OrganismAbsidia repens
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Cunninghamellaceae> Absidia.
Aromaticity0.08
Grand average of hydropathy-0.387
Instability index42.83
Isoelectric point6.55
Molecular weight219586.87
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13540
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.30|      21|     213|    1086|    1114|       1
---------------------------------------------------------------------------
 1089- 1114 (29.75/36.24)	NAVENLCAAYQYQngalWVgLVLDGV
 1299- 1319 (40.55/20.46)	NAMNEVSGAYQQP....WV.LPADEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     194.47|      43|     219|    1620|    1662|       2
---------------------------------------------------------------------------
   61-   91 (25.13/ 6.94)	.PYSSAPGSSYSTTPTNTTSPystasSPGYHS.................
  310-  333 (24.01/ 6.35)	....................P.....SNSASGSMRGHRNsNVPGVGGVN
  542-  575 (39.45/14.49)	..IESSTSKSAATPITNTSAD.....LANSESSKSGHKG.NI.......
 1595- 1618 (31.56/10.33)	PP....ASQQQQQRV...QSP.....DQNMSSSSSA.............
 1620- 1662 (74.32/32.88)	PPILSSTGNQQQQRISATSTP.....SPAHHSSLKSFPN.NVLLLSSVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.41|      47|     491|    1225|    1293|       6
---------------------------------------------------------------------------
  599-  653 (71.59/34.32)	ADSGYLLFGNNNTG.WTDEKGHSAMTASLvifsgCTNgSTVHTNLLnqVVQILCRW
 1246- 1293 (83.82/47.47)	ADGTSANTGTSSNGsTTDDNANSNQWHHI.....CEN.MMILIRLL..VVQERCYW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.75|      20|     545|    1372|    1391|      12
---------------------------------------------------------------------------
 1372- 1391 (38.99/29.59)	LQIGWFRQACVRDLHGVYRR
 1931- 1950 (35.76/26.42)	INLGLFRARKSRRMDGTYIR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.10|      20|    1313|     232|     251|      13
---------------------------------------------------------------------------
  232-  251 (36.23/25.77)	RTL.SRNVPHGYKGEKLLETL
 1546- 1566 (29.87/19.83)	RSLfFKNVIHGLRKRVLLELL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     376.69|     123|    1380|     367|     499|      14
---------------------------------------------------------------------------
  367-  499 (180.00/153.80)	EGLLDQRNFLKWTLDTLATSGSFEI.MWVVLTGIIQDYIDEYRRNR.....TLTKLLVETLIKAYSAVLQCSKFpTTDTTTSATSNSSNMLTglKRDIERMiqSLFLSSPDmfVIPKLYhQYRqlFEVILGEQSH.IKLT
 1750- 1879 (196.69/131.38)	EGLSPEPTDLSVTLDDLRTSLLIRIrLMVPFASLIWEYPKEDECDAlswiwTLVILLGNPIVHGNGSQEQFFEF.VLDFVSLIIDEVPPVIR..KQTLARL..STLPGEPT..TVPAMF.QSR..VNRILPFSTHnIYLT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13540 with Med12 domain of Kingdom Fungi
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