<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13531

Description Fungal-specific transcription factor domain-domain-containing protein
SequenceMDPGFLPHQQQQQQQHQRHSSDEEHSDYYTLKTGKKRERATQACSPCRKKKKRCDGAKPNCKNCMEAGLECSYAVCKRRGPRKGYVQLLEERLAMLERRLSSLPVSPTSTSPTTTTVAATDDTGKKPTLLMESSSSESLDDIKMPKEDVVLHLVDFFFKYINSIFPLVHHSTLVQSIKDGSISPPLLWSVMAIGARFSDHPDIKTDPPYWAGEKFARKAGSMINNDLFEPTVPNLQFWGVMACLEYGRAAGSRAWIYGGLAARICFELGFHKEETLKLPVYKKDGTMDRVAMLMRRRIFWSCFNIDKYGSAGNSRPQFFSKGDYDVDLPDDESLALLNPLHQNVTVDYKPVKVDSLGSFIKYYLSLMELFGDVIKGLQRAKNNQNKAMWPPTDDFDQLNNELQAWKRDLPTHMDFSLEDLEYHLERASRGKINHYLCAHVIWRTLVLALHRGSLAYVDPPTNSNSNNNRRFASTFSPQMWDRIQYSVSMCKQVVNDVMPIFEAMKNICGVNVIPYMGYSSYMFATILMTSTFTNTEEEHRKGTKGLLLLYDMIELLRPYWPVCERLSVTTRDLIVSHSRMYEYSQEEHYKRTGYELPSSPRLRPFQSYPPSASASTESPSSTTTATTAPASTLSHQQNIPVSMINLLNSNDSPRQDVPLGYPSYSLSTIPASQQQQSSTLPQTSFSSSISAPSSLSSSALLSDTMDVGGSTFGDSGGGITDPYTSSGAIDFNSSAFLYDTGLFGQLMFDETKFMNDPSFFGLQQQQQQQQQQQQQQRPQQPMTFTQNNNSRILPSSSPTTTSPTTYMSSSTSPPILDYGKRTWEPVWRS
Length829
PositionTail
OrganismAbsidia repens
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Cunninghamellaceae> Absidia.
Aromaticity0.10
Grand average of hydropathy-0.539
Instability index58.78
Isoelectric point7.26
Molecular weight93540.50
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
DNA binding	GO:0003677	IEA:UniProtKB-KW
DNA-binding transcription factor activity, RNA polymerase II-specific	GO:0000981	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13531
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.09|      43|     753|       2|      46|       1
---------------------------------------------------------------------------
    2-   46 (72.20/46.27)	DPGFLPHQQQQQQQHQRHSSDEEHSDyYTLkTGKKRERATQACSP
  756-  798 (80.89/43.60)	DPSFFGLQQQQQQQQQQQQQQRPQQP.MTF.TQNNNSRILPSSSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.53|      27|     140|     472|     526|       2
---------------------------------------------------------------------------
  498-  526 (48.44/70.81)	MPIfeAMKNICGVNVIPY....MGYSSYMFATI
  639-  669 (44.09/14.09)	IPV..SMINLLNSNDSPRqdvpLGYPSYSLSTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     189.55|      57|     506|     171|     228|       4
---------------------------------------------------------------------------
  171-  228 (102.29/64.39)	STLVQSIKDGSISPP.......LLWSVMAI.GARFSDHPDIKTDPPYWAGE.KFARKAgSMINNDLF
  678-  743 (87.27/50.14)	STLPQTSFSSSISAPsslsssaLLSDTMDVgGSTFGDSGGGITDPYTSSGAiDFNSSA.FLYDTGLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.89|      20|     173|     234|     272|       8
---------------------------------------------------------------------------
  234-  253 (38.57/57.34)	NLQFWGVMACLEYGRAAGSR
  296-  315 (39.31/15.52)	RRIFWSCFNIDKYGSAGNSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.18|      23|      47|     536|     561|       9
---------------------------------------------------------------------------
  536-  561 (35.68/30.23)	EEEHRKGTkGLLLlyDMIELLRPY..WP
  585-  609 (41.50/23.52)	QEEHYKRT.GYEL..PSSPRLRPFqsYP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13531 with Med15 domain of Kingdom Fungi
Unable to open file!