<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13526

Description Raptor N-terminal caspase like domain-domain-containing protein
SequenceMPIATQVASDTNEDARSTSSTLVNGENSRRNETEIETPLATAETTTTDERSQPQQNNSRSTTTTVRHGFDQEVFEEDIIRFLYYSEKRHDTNAKPHPVVRNTLLDWRLRERIKTVSGLLVICLNIGTDPPDVVKTNPSAKLECWIDPFLVIPQKSLETIGKNLHTQYENINSRTRFKLSLDPSVEETKKLCCQTRRNAKEERILFHYNGHGVPKPTASGEIWVFNRNYTQYIPVSLFDLQSWLGSPVIYVWDCSSAGNIVNAFNRFAEQRDNEALRMSQQQPQQQQQQQQQQQQQQQGTASNMSSWRDCIQLAACGPTETLPMNPDLPADVFTSCLTTPIEMSLRWVIMRNPLLTNNITMDMVLRLPGCAKERRTPLGELNWIFTAVTDTIAWCVLQDQPELFKRLFRQDLMVASMFRNFLLAERIMRSYQCTPISTPTLPDTHDHPMWQAWDLAVDMCLFQLPALLAAENNGSTYQYQPSSFFAEQLTAFEIWLSEGAVNPKIPEQLPIVLQVLLSQVHRLRALILLSRFLDLGPWAVNAALSVGIFPYVLKLLQSPAAELKPVLVFIWARILAVDRSCQNDLLKDHGYAYFINILTPNNAMLSIPHVSEHRAMSAFILSVFCTNFKLGQQACLRGNVITACLAHVKDPDPLLRQWVCLCLAQVWMNNSEAKAAAVAENGHEKLCAMLDDSVPEVRASVMYALGTFLGDTNKTEHIMNIEHNIAIASLAAMSDGSPIVRKEFVIALSNIVHQAGPNNFLVAASQTIDEEQAQRGDGGGSGSDTNGNNTNGNGRIKGSSRSNRPVSAVLAEWRANMSSHYGSTSYESVYAVIWKALLNLSVDPHPDVAKAAATVVDHINGILLDTPSVGDYVAQVVRESLQNQLNVDPSISTTGNVDSTGLQTPPYLNDLFTPASSSSPSSVARPAKLTRSVSFASTLRTIYNFGNATSGEEPLAVESGTENGSSSASQTAQRLPSRSNLSMTSNNLQHNNGPKSASYLNNISNTESIAPSNNVNSVLPLSSEFYDWSCEYFTEPQMRAAESDEPGSVVYTQRKWRRSRNEKILIESNSAKAMTRSNRWEDQIISVHNETEATHLLFHQYEPHLVASDAYNCLVVWDWKTGAPLSVIDNHNPPQSRITDMKFINEDDVALLLTGSDDGVVRLYKNYDGSDQEDAILVSSWRALKDMEKSNSKQSGLVCEWHQGRGALFTGGDARAIKVWDAHQEMTVMDIATQSAGCVTSITSDQVSGNIVVAGFGDGMIGVYDRRLRPNSAMVQRWDEHKSWVTNVHMQRGGNRELISGGGGDIKIWDIRDSQSVRTIEAHTDANMTSLEVHDHSQAIVSAGDDQVIKFWNMDGSRLSTIRPSTGFLGQKTSFTRALSFHPNLLTVAASSDDGYITLYGKQ
Length1402
PositionTail
OrganismAbsidia repens
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Cunninghamellaceae> Absidia.
Aromaticity0.07
Grand average of hydropathy-0.335
Instability index49.09
Isoelectric point5.63
Molecular weight155833.51
Publications









Function






Annotated function


GO - Cellular Component
TORC1 complex	GO:0031931	IEA:InterPro

GO - Biological Function
GO - Biological Process
TOR signaling	GO:0031929	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13526
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     511.50|     109|     110|     989|    1097|       1
---------------------------------------------------------------------------
  745-  838 (92.58/49.68)	.....................................IALSNIVHQAGP..NNFLVAASQTIDEEQ..AQRGDGGGSGSDTNGN.N.................TNGNG.RI........KGSSRSN........RpvsavlaeWRANMSSHYGSTsyESVYaviwkaLLN
  857-  988 (126.94/70.97)	HINGilldtPS.VGDYVaqvvreslqNQ...LNVDPSISTTGNVDSTGLQTPPYLN...DLFT.....PASSSSPSSVARPAKLTRsvsfastlrtiynfgnaTSGEE.PLAVESGTE.NGSSSAS........Q........TAQRLPSRSNLS..MTSN......NLQ
  989- 1097 (183.22/105.86)	HNNG.....PK.SASYL.........NN...ISNTESIAPSNNVNSVLPLSSEFYDWSCEYFTEPQMRAAESDEPGSVVYTQRKWR.................RSRNE.KILIESNSA.KAMTRSN........R........WEDQIISVHNET..EATH......LLF
 1098- 1202 (108.76/59.71)	HQYE.....PHlVASDA.........YNclvVWDWKTGAPLSVIDNHNPPQSRITDM..KFINEDDVALLLTGSDDGVVRLYKNYD.................GSDQEdAILVSSWRAlKDMEKSNskqsglvcE........WHQ........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.76|      14|     122|     315|     328|       3
---------------------------------------------------------------------------
  315-  328 (30.79/16.20)	CGP..TETLPMNPDLP
  432-  447 (26.96/13.34)	CTPisTPTLPDTHDHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     201.96|      62|      88|    1204|    1267|       6
---------------------------------------------------------------------------
 1204- 1267 (101.37/83.47)	RGA...LFTGGDArAIKVWDAHQEMTVMDIATQSAGCVTSITSDQVSGNIVVAGfGDGMIGVYD...RRL
 1291- 1358 (100.59/72.38)	RGGnreLISGGGG.DIKIWDIRDSQSVRTIEAHTDANMTSLEVHDHSQAIVSAG.DDQVIKFWNmdgSRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.99|      19|      83|     638|     656|      18
---------------------------------------------------------------------------
  638-  656 (33.93/25.21)	NVITACLAHVKDPDPLLRQ
  723-  741 (31.06/22.35)	NIAIASLAAMSDGSPIVRK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13526 with Med15 domain of Kingdom Fungi
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