<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13523

Description Uncharacterized protein
SequenceMNQQPNIPNGQQNDAPNPNWRDEMTVQDRARFVTQLAQALKHLSPNTTEQDIFAAAKNFELTLYQRSTNKNQYILAYARKFNQIKYQIQMQTQNGGPPSGVGGGANVVNDQLNGLGASPLMNTQQPQSSVSPQMQAMQQQMQNMSNSLNPNQQLPMQVQNQMRPNMFQQATGLQQPNQQQNQQQTNQQNQQQQNPNQISSEMLAFQQRAAAMGNNPTSLPMGVQQQQQPSPASSALLQNLQNGQTSMTQQQQQQQQQVQVFLARQMALQQQQQQAQQQQQAQQQQQQQQQQAQQQAQQQQQQAQQAQQAKQQQQQQPQQQNQQPNQQQSQQTQQPGLSTTMDPNAMMNMAMANRNANRPPGPPTTSGIAVSGAQANFANANMMNQVPMMQNPLQGQTQHISPELMLQLQQQQQHLQQQHQLQLHQLQQQHNQQLQGQSNQPNQGQLFQQQQAQLQQMQQQQMQQLHQQQQQQIQRQSSPAQQQQQNAQQNNFSQQQQKQPPQPQQQQSDLNPAQQTNDATTQLQQNARNTTPQQRSQATDMIRQLDETISNTRARARPLENLTDQEKNAIRESVIQMRPMYEKIDQLLPIFLALTSNVEATRRLILMKYMFEDQLNVLPQNVYLVSLENLQKLRDQFSGYFSWVKNAINGNATQASQQQQMQQQQQQQQQQQQQQQQQNTTQPPSSQSNSQPMDPQQQPVSQPYTGVQQQLQSPAQVKQQQPQQTHQQQAQQQVSRPPASGPHVESSANTIAPGMQQSPNPNLIKRESIDLKLPASKKQRATNQPSPSMSTPPQQQQQQQQQQQRSSPASVTSGASPSAPPTSGAPAMVDLTRSASSTASPGPVKSEPQTSGAMTEAAPMPSLSGPGQPQQQQQSGMTPMQREAQTHMVYQAAIAGGIPSQIVEILPQRALQCSWLLQQATQNRIRLTPVQQDQIRGMLNEFIAKAKEQLVEKQGQQQQPTQSSPNNTLTQQTPQDTLSVNATFGQKGNSIDLTTTPATTTATTVAATAGSNAPPAGMQRISMEKAMELAAASATTSPSQQATHIMQLVQQQQQQQQQHQQKMDGVTSAVTTASMNTATSIPAAITSNQNVTAMPMSAAAAAATTAVAPALTTAPVSTLRKGMGPDDKVTDPMQYANDVLKDVASILATPSSCSTDSTSTPLFMVDDFLVDGSGSGGGSSFDTMDNKDNNGDDRRTVLFTSSPSSLVHNALKEGFKDETFGINELDTKYLLSSSTTTTTTNNNTNGSNSQYPWPDQSSNSSSLSSSSFSSCELNEDFVKNNWYQVGMDKDVLGIAETMPGLEFDEDGYINCGGPSRLSQASLF
Length1323
PositionTail
OrganismAbsidia repens
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Cunninghamellaceae> Absidia.
Aromaticity0.03
Grand average of hydropathy-0.989
Instability index68.63
Isoelectric point6.27
Molecular weight146096.32
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13523
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|    1432.79|     354|     384|     164|     547|       1
---------------------------------------------------------------------------
    1-  317 (462.73/64.19)	.............................MNQqpNIPNGQQNDAPNPNWRDEMTVQD.RARFVT............Q................LAQALKHLSPN...TTEQDIFAAAKNFELTLYQ...........RSTNK.............NQYILaYARKFNQIK..YQIQMQT.........Q.NGGPPSGVGGGA..NVVND.QLNGLGASPlmntQQ.........PQSSVSP..QMQ.AMQQQMQNMSNS..lNPNQQ...LPMQVQ.NQmrPNMFQQAtglqQPNQ...qqnQQQTNQQNQQQQNPNQISSEMLAFQQRAAAMGNNPTSLPMG..VQQQQQPSPASSALLQNLQNGQT......................SMTQQQQQQQQQVQVFLARQMALQQQQQQAQQQQQAQQQQQQQQQQAQQQAQQQQQQAQQAQQAKQ..QQQQQP
  318-  699 (525.65/83.23)	QQQNQQPNQQQSQQTQQpglsttmdPNamMNM..AMANRNANRPPGPPTTSGIAVSGAQANFANANMMNQVPmmqNP................LQGQTQHISPELMLQLQQQQQHLQQQHQLQLHQLQQQHNQQLQGQSNQP.............NQGQL.FQQQQAQLQQMQQQQMQQLhqqqqqqiQrQSSPAQQQQQNAQQNNFSQ.QQQKQPPQP....QQ.........QQSDLNPaQQTNDATTQLQQNARNT...TPQQRSQATDMIRQLDEtiSNTRARA....RPLE..........NLTDQEK...NAIRESVI..QMR...........PM...YEKIDQLLPIFLALTSNVEATRRlilmkymfedqlnvlpqnvylvSLENLQKLRDQFSGYFSWVKNAINGNATQASQQQQMQQQQQQQQQQQQQQQQQNTTQPPSSQSNSQpmDPQQQP
  708- 1062 (444.41/58.20)	QQQLQSPAQVKQQQPQQ........TH...QQ..Q.AQQQVSRPP....ASGPHVESS.AN.TIAPGMQQSP...NPnlikresidlklpaskKQRATNQPSPSMSTPPQQQQQQQQQQQRSSPASVTSGASPSAPPTSGAPamvdltrsasstaSPGPV.KSEPQTSGAMTEAAPMPSL...........SGPGQPQQQ..QQSGMTPmQREAQTHMV....YQaaiaggipsQIVEILP.QRALQCSWLLQQATQNRirlTPVQQDQIRGM...LNE.................fiakakEQLVEKQGQQQQPTQSSPNNTLTQQTPQDTLSVNATFGQKGnsIDLTTTPATTTATTVAATAGSNA......................PPAGMQRISMEKAMELAAASATTSPSQQATHIMQLVQQQQQQQQQHQQK.........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.61|      27|      31|    1187|    1214|       2
---------------------------------------------------------------------------
 1187- 1214 (42.13/33.07)	KDN....NGDDRRTvLFTSSPSSLVHNALKEG
 1216- 1246 (37.48/24.09)	KDEtfgiNELDTKY.LLSSSTTTTTTNNNTNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.17|      37|     119|    1132|    1182|       3
---------------------------------------------------------------------------
 1095- 1131 (62.29/38.75)	PMSAAA.....AAATTAVAPALTTAPVST........LRKGMGPDDKVT.D
 1132- 1182 (46.88/60.97)	PMQYANdvlkdVASILATPSSCSTDSTSTplfmvddfLVDGSGSGGGSSfD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13523 with Med15 domain of Kingdom Fungi
Unable to open file!