<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13517

Description WD40-repeat-containing domain protein
SequenceMKNSLSKRDHQAFAYSNQEDETDSLQLRPSPRPPQPVPTAFKTTRRSFHSLSVAPSYQNDPSISTNKDYNGNSNTTSKSPHLLSYDISSQRPSSATKKSRLYRFQNHRQQQQQQQQQQQQQQQQQQQQQLYAPVPSSLIPAKNDLDNTATNSINKRSQASDKKDFISELPYELILLILKELNVYSLLVLGEVNRGWRDIINMGDEWHRRMQQNGWTIRLPAHWQQIITSSDQMQWRYWFLQRYKLSERWRLGQVAAHYLLGHRDSVYCVQFDDRKIISGSRDRTIKIWDATSYQCVRTLSGHDGSVLCLQYDRDYLVSGSSDNTVMVWSMRTLRQLMRIRGHTAKVSDVCFNKEYIVSGSKDSTIRISTLKTGELIRVIHAHDGPVNSVKIHKNNIVSGSRETMIKMWDINTGECLREFTGHTHGLACLQFDGNIIVSGANDQKIKVWNAKTGECMTTCEGHTGLVRALSFSENRIVSCGYDQSIRVWDSETGTCLLNFQSGHTSWIFDVNFDDKRIISSSQDGRILVMDFAQGLDTRFIC
Length541
PositionTail
OrganismAbsidia repens
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Cunninghamellaceae> Absidia.
Aromaticity0.09
Grand average of hydropathy-0.651
Instability index49.43
Isoelectric point9.10
Molecular weight62161.16
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13517
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     382.19|      38|      38|     429|     466|       1
---------------------------------------------------------------------------
  261-  300 (58.30/38.19)	GHRDSVycVQFDDRKIISGSRDRTIKIWDATSYQCVRTLS
  301-  340 (53.64/34.52)	GHDGSVlcLQYDRDYLVSGSSDNTVMVWSMRTLRQLMRIR
  341-  380 (53.65/34.53)	GHTAKVsdVCFNKEYIVSGSKDSTIRISTLKTGELIRVIH
  381-  420 (58.50/38.35)	AHDGPVnsVKIHKNNIVSGSRETMIKMWDINTGECLREFT
  421-  460 (61.50/40.70)	GHTHGLacLQFDGNIIVSGANDQKIKVWNAKTGECMTTCE
  461-  500 (59.34/39.01)	GHTGLVraLSFSENRIVSCGYDQSIRVWDSETGTCLLNFQ
  502-  534 (37.26/21.64)	GHTSWIfdVNFDDKRIISSSQDGRILVMDFAQG.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.58|      26|      30|      43|      69|       2
---------------------------------------------------------------------------
   43-   69 (43.25/34.59)	TTRRSFHSLSVAPSYQNdPSISTNKD..Y
   75-  102 (41.33/27.75)	TTSKSPHLLSYDISSQR.PSSATKKSrlY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.68|      18|      33|     206|     223|       3
---------------------------------------------------------------------------
  206-  223 (38.58/27.10)	W.....HRRMQQNGWTI.RLPAHW
  235-  258 (24.09/14.02)	WrywflQRYKLSERWRLgQVAAHY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.10|      21|      33|     119|     139|       5
---------------------------------------------------------------------------
  119-  139 (35.51/22.85)	QQQQQQQQQQQLYAPVPSSLI
  154-  174 (33.59/21.22)	NKRSQASDKKDFISELPYELI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13517 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MKNSLSKRDHQAFAYSNQEDETDSLQLRPSPRPPQPVPTAFKTTRRSFHSLSVAPSYQNDPSISTNKDYNGNSNTTSKSPHLLSYDISSQRP
2) SATKKSRLYRFQNHRQQQQQQQQQQQQQQQQQQQQQLYAPVPSSLIPAKNDLDNTATNSINKRSQA
1
94
92
159










Molecular Recognition Features






MoRF SequenceStartStop




1) HQAFAY
2) RLYRFQ
10
100
15
105