<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13491

Description mediator of RNA polymerase II transcription subunit 24-like
SequenceMVMESKTTSKTSILKALLLRAWRERWSDVQWGIYIKTVLPRGVSGDVYNLADCILQQALVGAGANQLVLSYLKHSLSAQLVSHAAVLQRLSKYSQYHKVHCVYSLLEFLEGMLPAITCYGKPEETVLATALLSTALWLLQVIIHCHCKIQILEKATLLLQNLLSSDFCVAMMCLARYSDTELFSEITKKCIEIENSPNDKEIAIKSVCVVHGLDVNSLKIVVPTEETPSSLVQSWLLVELVQHPDSSTSSLVRQLHLLQHLKNLSNAKLYFELIRASLLCLQDLSQTPYETQWGAFAFLKVPHILATLNTKSESAETVEKAVELLLQNSPLLDAMDTRSSCSSLDCLLGELVKLRLLTDVQVQCLSARRVTPPQLKTDEAPATAGISKVVIRAEPTFTGILKTMTADYHKIQEALLGMLYQVLTGKSLELILAVATVQGHLRTFAARLNRFNECSKIGADKSRAQLFDISFLILVAIVQQYGVETAFEAGNDDSFVEQWVRECMVEPNRPKASDQLLKLCDATTVDLLLQQFNAGESDFKGNSVKWHDIVFNIPGVMREVLVAWEQGALLPADVKRILDAVRGRMCCLPVAAAAWLCAYMKTAPQDTLLKPVNMVQQLLAPPPLPEEDNHRERWLLSCEIIRRMQRDIQLPLQSKISGNISFRQPAAEQFHNLWMKAVKRGWLDHSSAKTVQGLLETAGPRWLVYSVVHELTQLRYRNQLSRGVDIALALFHFDIYKCCLELLCYVLPQHLINSKQADEIVDPQLSAVAKLTSYCLYATCELITAKNDRDIESGPPSQKISRLSETCYDAKSNPSIDVLLPFLRQMLIALETTLQEGHVTQQIYFALHLLKYLVETYSPITTIILSAVPPSLVSGLLKILPEHFGSAFLLHLYDIHTTSGRSNMAKDLCLLRNYQLKNLGGSGR
Length924
PositionTail
OrganismAgrilus planipennis (Emerald ash borer) (Agrilus marcopoli)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Coleoptera> Polyphaga> Elateriformia> Buprestoidea> Buprestidae> Agrilinae> Agrilus.
Aromaticity0.07
Grand average of hydropathy0.094
Instability index44.88
Isoelectric point6.93
Molecular weight103370.20
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13491
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.03|      28|      48|     439|     469|       1
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  439-  469 (38.90/36.41)	GHLRTFAARLNRfnECsKIGADKSRA..QLFDI
  490-  519 (46.13/30.03)	GNDDSFVEQWVR..EC.MVEPNRPKAsdQLLKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.24|       9|     260|     345|     379|       4
---------------------------------------------------------------------------
  371-  379 (16.55/10.91)	TPPQLKTDE
  620-  628 (17.69/ 9.46)	APPPLPEED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.91|      33|      38|     703|     740|       6
---------------------------------------------------------------------------
  703-  740 (46.93/46.33)	LVYSVVHELTQLRYRNQLsrgVDIAL.ALFHFDIYkcCL
  743-  776 (52.98/34.78)	LCYVLPQHLINSKQADEI...VDPQLsAVAKLTSY..CL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.82|      15|      38|     595|     609|       7
---------------------------------------------------------------------------
  595-  609 (28.96/16.71)	WL..CAYMKTAPQDTLL
  634-  650 (23.86/12.65)	WLlsCEIIRRMQRDIQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.79|      28|     303|      95|     130|       9
---------------------------------------------------------------------------
   95-  130 (41.35/35.53)	QYHKVhcvysllEFLEGMLPAITCyGKPEETVLATA
  407-  435 (44.44/25.06)	DYHKI......qEALLGMLYQVLT.GKSLELILAVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.77|      42|     597|     177|     223|      10
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  177-  223 (62.50/51.65)	YSDTELfseITKKC.IEIENSPNDKEIA.IKSVCvvHGLDVN.SLKIVVP
  777-  821 (60.27/36.66)	YATCEL...ITAKNdRDIESGPPSQKISrLSETC..YDAKSNpSIDVLLP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13491 with Med24 domain of Kingdom Metazoa
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