<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13481

Description zinc finger protein 3 isoform X6
SequenceMQHVSAASSVPSVVAPVVTTGGTTITLGGPPPLPKSEHKEDGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHQLAAAHGGQLPPPPPLPPQVTSHAASAAAAAAAASTNNAAVAAVMASANAAAAAAAAASSAGGLPPATSGNGGQPVTVTTTSSSTSSGGGSTTSGGTTTTAGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQEMERPFACEKCPKNFICKVPHHSATTTMHTIQQITAGAAGGAGAVQLTPGLVPLVTSTLISHNAAAQQQSQKQQAAAQQQAAAAAAAQQQAAQQQAAVAAHQQHQQQVAAQHQQQAAVAAHQQQQQLQQQQQQLLQLSIQQAAHHHQQEQHRQQQQQQHQQQQQQQQHHQQQQQGHPQAPPPQQQQQPPPIALISDPSALARAAIQLQHLPANVEQHPVVY
Length685
PositionKinase
OrganismDrosophila ficusphila (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Sophophora.
Aromaticity0.04
Grand average of hydropathy-0.788
Instability index53.48
Isoelectric point9.26
Molecular weight75027.97
Publications









Function






Annotated function


ECO:0000256	RuleBase:RU364134

GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP13481
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     521.00|      25|      26|     249|     273|       1
---------------------------------------------------------------------------
  192-  219 (45.52/22.75)	KYTRKEHLANHM.RSHT.N...ETPFRCeicGK
  220-  245 (48.86/24.96)	SFSRKEHFTNHI.LWHTaG...ETPHRC...DF
  249-  273 (60.55/32.65)	TFTRKEHLLNHV.RQHT.G...ESPHRC...SY
  277-  301 (58.93/31.59)	TFTRKEHLVNHI.RQHT.G...ETPFKC...TY
  305-  329 (56.14/29.75)	AFTRKDHMVNHV.RQHT.G...ESPHKC...TY
  333-  357 (61.26/33.12)	TFTRKEHLTNHV.RQHT.G...DSPHRC...SY
  361-  385 (58.64/31.40)	TFTRKEHLTNHV.RLHT.G...DSPHKC...EY
  389-  413 (53.56/28.05)	TFTRKEHLNNHM.RQHS.S...DNPHCC...NV
  417-  442 (50.62/26.11)	PFTRKEHLINHMsRCHT.G...DRPFTC...ET
  446-  472 (26.92/10.51)	SFPLKGNLLFHQ.RSHTkGqemERPFAC.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     161.18|      22|      22|     557|     578|       2
---------------------------------------------------------------------------
  536-  553 (27.06/ 7.81)	KQQAA..AQQQAAA..AAAAQQ
  557-  578 (45.27/18.97)	QQQAAVAAHQQHQQQVAAQHQQ
  579-  597 (31.45/10.50)	..QAAVAAHQQ.QQQLQQQQQQ
  613-  625 (26.46/ 7.44)	EQ......HRQQQQQ...QHQQ
  640-  661 (30.96/10.20)	HPQAPPPQQQQQPPPIALISDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.78|      15|      22|     100|     120|       3
---------------------------------------------------------------------------
   98-  112 (25.68/11.95)	VTSHAASA.AAAAAAA
  119-  134 (20.10/ 8.23)	VAAVMASAnAAAAAAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13481 with Med12 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAAASSAGGLPPATSGNGGQPVTVTTTSSSTSSGGGSTTSGGTTTTAGQ
2) HNAAAQQQSQKQQAAAQQQAAAAAAAQQQAAQQQAAVAAHQQHQQQVAAQHQQQAAVAAHQQQ
3) HQLAAAHGGQLPPPPPLPPQVTSHAASAAAAAA
4) LLQLSIQQAAHHHQQEQHRQQQQQQHQQQQQQQQHHQQQQQGHPQAPPPQQQQQPPPIALISDPSALARAAIQLQHLPANVEQHPVVY
5) TTGGTTITLGGPPPLPKSEHKEDGKPPHGIEM
133
526
78
598
19
181
588
110
685
50










Molecular Recognition Features






MoRF SequenceStartStop




NANANA