<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13480

Description zinc finger protein 3 isoform X5
SequenceMQHVSAASSVPSVVAPVVTTGGTTITLGGPPPLPKSEHKEDGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHQLAAAHGGQLPPPPPLPPQVTSHAASAAAAAAAASTNNAAVAAVMASANAAAAAAAAASSAGGLPPATSGNGGQPVTVTTTSSSTSSGGGSTTSGGTTTTAGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQEMERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAGGAGAVQLTPGLVPLVTSTLISHNAAAQQQSQKQQAAAQQQAAAAAAAQQQAAQQQAAVAAHQQHQQQVAAQHQQQAAVAAHQQQQQLQQQQQQLLQLSIQQAAHHHQQEQHRQQQQQQHQQQQQQQQHHQQQQQGHPQAPPPQQQQQPPPIALISDPSALARAAIQLQHLPANVEQHPVVY
Length755
PositionKinase
OrganismDrosophila ficusphila (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Sophophora.
Aromaticity0.04
Grand average of hydropathy-0.767
Instability index53.13
Isoelectric point9.36
Molecular weight82851.16
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13480
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            12|     640.75|      27|      27|     331|     357|       1
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  181-  208 (51.16/28.54)	QTPHQCDVCgKKYTRKEHLANHM.RSHT.N
  209-  236 (52.05/29.17)	ETPFRCEICgKSFSRKEHFTNHI.LWHT.G
  237-  264 (59.81/34.63)	ETPHRCDFCsKTFTRKEHLLNHV.RQHT.G
  265-  292 (61.02/35.48)	ESPHRCSYCmKTFTRKEHLVNHI.RQHT.G
  293-  320 (56.74/32.47)	ETPFKCTYCtKAFTRKDHMVNHV.RQHT.G
  321-  348 (61.82/36.04)	ESPHKCTYCtKTFTRKEHLTNHV.RQHT.G
  349-  376 (59.68/34.54)	DSPHRCSYCkKTFTRKEHLTNHV.RLHT.G
  377-  404 (58.29/33.56)	DSPHKCEYCqKTFTRKEHLNNHM.RQHS.S
  405-  433 (53.50/30.19)	DNPHCCNVCnKPFTRKEHLINHMsRCHT.G
  434-  462 (41.43/21.69)	DRPFTCETCgKSFPLKGNLLFHQ.RSHTkG
  466-  493 (49.02/27.03)	ERPFACEKCpKNFICKGHLVSHM.RSHS.G
  494-  521 (36.24/18.04)	EKPHACTLCsKAFVERGNLKRHM.KMNH.P
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.18|      22|      22|     627|     648|       2
---------------------------------------------------------------------------
  618-  642 (36.58/11.15)	AAAAQQqaaQQQAAVAAHQQHQQQV
  643-  661 (38.18/11.98)	AAQHQQ.....QAAVAAHQQ.QQQL
  706-  725 (28.42/ 6.90)	..QQQG...HPQAPPPQQQQQPPPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.32|      19|      22|     100|     120|       3
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   98-  116 (32.00/11.68)	VTSHAASAAAAAAAASTNN
  589-  607 (26.32/ 9.10)	VTSTLISHNAAAQQQSQKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.43|      10|     435|      88|      97|       5
---------------------------------------------------------------------------
   27-   36 (21.47/ 7.64)	LGGPPPLPKS
   88-   97 (24.96/10.01)	LPPPPPLPPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.89|      16|      22|     137|     155|       6
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  137-  155 (22.20/21.00)	SSAGGlPPATSgnGGQPVT
  163-  178 (29.69/15.36)	TSSGG.GSTTS..GGTTTT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.49|      11|      14|     678|     688|       7
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  678-  688 (23.17/ 8.44)	HHHQQEQHRQQ
  695-  705 (22.32/ 7.86)	QQQQQQQHHQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13480 with Med12 domain of Kingdom Metazoa
Unable to open file!