<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13474

Description gastrula zinc finger protein XlCGF57.1 isoform X7
SequenceMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQEMERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAGGAGAVQLTPGLVPLVTSTLISHNAAAQQQSQKQQAAAQQQAAAAAAAQQQAAQQQAAVAAHQQHQQQVAAQHQQQAAVAAHQQQQQLQQQQQQLLQLSIQQAAHHHQQEQHRQQQQQQHQQQQQQQQHHQQQQQGHPQAPPPQQQQQPPPIALISDPSALARAAIQLQHLPANVEQHPVVY
Length554
PositionKinase
OrganismDrosophila ficusphila (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Sophophora.
Aromaticity0.05
Grand average of hydropathy-0.981
Instability index56.85
Isoelectric point9.52
Molecular weight63178.60
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13474
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            11|     608.34|      27|      27|     130|     156|       1
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    2-   15 (21.33/ 6.73)	..............RSHT.N...ETPFRCEIC
   17-   44 (52.92/27.41)	KSFSRKEHFTNHI.LWHTaG...ETPHRCDFC
   46-   72 (65.57/35.70)	KTFTRKEHLLNHV.RQHT.G...ESPHRCSYC
   74-  100 (64.41/34.94)	KTFTRKEHLVNHI.RQHT.G...ETPFKCTYC
  102-  128 (62.46/33.66)	KAFTRKDHMVNHV.RQHT.G...ESPHKCTYC
  130-  156 (66.36/36.21)	KTFTRKEHLTNHV.RQHT.G...DSPHRCSYC
  158-  184 (64.34/34.89)	KTFTRKEHLTNHV.RLHT.G...DSPHKCEYC
  186-  212 (58.98/31.38)	KTFTRKEHLNNHM.RQHS.S...DNPHCCNVC
  214-  241 (56.62/29.84)	KPFTRKEHLINHMsRCHT.G...DRPFTCETC
  243-  273 (41.62/20.01)	KSFPLKGNLLFHQ.RSHTkGqemERPFACEKC
  275-  301 (53.74/27.95)	KNFICKGHLVSHM.RSHS.G...EKPHACTLC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     133.15|      22|      22|     426|     447|       2
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  426-  447 (44.10/13.94)	QQQAAVAAHQQHQQQVAAQHQQ
  448-  466 (31.09/ 7.76)	..QAAVAAHQQ.QQQLQQQQQQ
  482-  497 (28.94/ 6.74)	EQ......HRQQQQQQHQQQQQ
  509-  530 (29.02/ 6.77)	HPQAPPPQQQQQPPPIALISDP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13474 with Med12 domain of Kingdom Metazoa
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