<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13429

Description Putative RNA polymerase ii holoenzyme cyclin-like subunit
SequenceMAANYWESTQRRNWQFSKDELAQMRDKLEESEQSLVQMFPLPQRRHLSIYFNQQLNRLGKRLGVRQQALATAQIYLKRFYCKVEIRRTNPYLVIATALYLACKMEECPQHIRLVVSEARSLWPVDFLTLDISRLGECEFFMISEMHSQLIVHQPYRTLTSLQSDFYLSQDETNLALSIVNDHFMTDLPLLYPPHIIALTAILLALVLRPNSPGGTATNMAAATATLMQAQAQAQAQAPARASGSNNTAAASEKDRQQEARVTKMHRYATFLTESVVNIEEMVDCTQELISFYECQEQYNDKFTREQINRFVKARGLDKP
Length319
PositionKinase
OrganismRosellinia necatrix (White root-rot fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Xylariomycetidae> Xylariales> Xylariaceae> Rosellinia.
Aromaticity0.09
Grand average of hydropathy-0.332
Instability index63.95
Isoelectric point7.05
Molecular weight36708.60
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13429
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.22|      12|      23|      64|      84|       1
---------------------------------------------------------------------------
   69-   84 (11.96/24.84)	LATAqIYLKrfyCKVE
   94-  105 (22.26/ 7.21)	IATA.LYLA...CKME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.05|      22|      26|     197|     222|       2
---------------------------------------------------------------------------
  199-  221 (33.69/23.94)	TAILL.....ALVLRPNSPGGTaTNMAA
  223-  249 (31.37/15.97)	TATLMqaqaqAQAQAPARASGS.NNTAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.87|      22|      25|     134|     157|       3
---------------------------------------------------------------------------
  134-  157 (33.00/32.76)	LgECEFFMiSEMHSQL...IVHQPYRT
  161-  185 (33.87/22.66)	L.QSDFYL.SQDETNLalsIVNDHFMT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13429 with CycC domain of Kingdom Fungi
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