<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13419
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPLLLDSAMSGMDQPPMPVDLNGVDDLFGDTDALSLPSRLPSRRLRRRLDELRGRGCCQGLAWSKGGTIASITPDGQSLELRYLRANPSDATWELSEAKNIAPWQNLNGGPIVHLSWGPANSELAVIDAVGRVLLLNFNSDLNRPLVSRPWEGDAVDDLHTIVGTYWLNQLPANSRFYPTYSPAIKGAKGTDYTFESSGVPTMGPSHPNPGKSAFICVTTNGLLKMFWSQNNNKPEETTLELESATSADDLITHAAACSDKTKTIYIAMATTSKQLRVVQVAIAFNQPKIENPQNPPLGGYTLTPSLGKRHVAVTSWFQTGMCESPLDASMSKISHIEMLPAHFDIQSKQWSPIVVITVRSFIPEPNSPYNQEVQSIIDRWELLADQKQAVHPAFERLGTRRNSVGSAPPATARLKKLDSIVVNKIVLGVNVLSFGKVILFYYNDGTVEYRDRFTMHELYREVNLSRMHSILEAGFNQSGGPSCLQMAFSPSNYSLVQMYEDWQIKWHNPEYTLVETSTITNDNLSAVIACCAMSTAAAATNNNNNIDDILAVAKKFPRQDQFAIKWVTDLVQVMRISVDYSEDQPHDHLIRNHHLQFCFSIFNHLGWNGEFHERHFRGKLSSLALSIRHTIIIVSLASSAPSSVRANSSPFDEPEVVYALAGCARWSIDFLSWLCNGLFTLLDDTKFMGFLTQTQTNQSQQLVNMTRYLHAKNEIALHLILCSSTRNLISAICRRINLLDNYATRALAWYSGQPKIPDGVGSRHIALNAAYRKVHRYTSSALVKADEFDKFIAVLAGDIRSAYATSLSPLEAQKVAKNPPPQNQTPNAPKPDRVKEARQHCELNMLLVLSPPPSFLAVITKLFRQDLTNFRANVDIAKLYFADYHLLEIVDTPEALANRRKRGTKVDMFRRVEISKQAQVSWRRCSRCGNTMEDLTSANNKAGMMFLLTQQRTCCCGGRLALLP |
Length | 965 |
Position | Tail |
Organism | Rosellinia necatrix (White root-rot fungus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Xylariomycetidae> Xylariales> Xylariaceae> Rosellinia.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.237 |
Instability index | 45.49 |
Isoelectric point | 8.46 |
Molecular weight | 107614.58 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP13419
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 350.29| 111| 419| 384| 508| 1
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384- 508 (171.03/154.87) LADQKQAVHPaferlgTRRNSVGSAPPATaRLKK.lDSIVVNKIVLGVNVLSFGKVILFYYNDGTVEYRDRFTMHELY.REVNLSRMHSILEAGFNQSGGPSCLQMafspsnYSLVQMYEDWQIKWH
811- 924 (179.26/125.61) LEAQKVAKNP......PPQNQTPNAPKPD.RVKEarQHCELNMLLVLSPPPSFLAVITKLFRQDLTNFRANVDIAKLYfADYHLLEIVDTPEALANRRKRGTKVDM......FRRVEISKQAQVSWR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 92.27| 28| 32| 106| 136| 2
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106- 135 (46.48/34.16) NLNGG...PIVHLSW.GPANSELAVIdaVGRVLL
137- 168 (45.79/23.24) NFNSDlnrPLVSRPWeGDAVDDLHTI..VGTYWL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 146.96| 47| 285| 237| 383| 3
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237- 283 (75.88/166.38) ETTLELESATSADDL........ITHAAACSDKTKTIYIAMATTSKQLRVVQVAI
511- 565 (71.08/10.01) EYTLVETSTITNDNLsaviaccaMSTAAAATNNNNNIDDILAVAKKFPRQDQFAI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 65.10| 20| 453| 287| 319| 5
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287- 319 (28.25/41.27) QPKIENpqnpplggytltpSLGKRHVAVTSWFQ
754- 773 (36.85/20.14) QPKIPD.............GVGSRHIALNAAYR
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