<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13400

Description Uncharacterized protein
SequenceMAPPSRDYWLGFFRGAGDNIFDAIDAAITVAASDHPAALRERRDGIAERLFTALLLHPEGAASVPSLCSSDRAEAITDDGAPRCDDPVLAETERIKAVLLNDQEKSESELLELLRRLQELDLAFDTLDVTAIGKAVANFRKHSSKQIRNLVRSLIEDWKHTVDVWIARRREAVVDQTPQSMGPSSLEQEDRGAASTHMDEGDLFATPSTTIRLSEENPGSKFSDGMDGDGSVMNNASRDFGQRYPMNQEQVRRPPPMGQRYDPEPYWRQEQSAPRQSRPQELSNGQTKEQFVAEMLARPSNVESGPGRPQARPRQHQDASPAQGRSQSAVSEKPAAQLDANSVRAKLELAKNAKLEATKRKLQEGYQEFDNAKKQRNIQMVDPQNLPKQGNNNRNFQPSGKPRNNSNVNTSNRNWSR
Length417
PositionUnknown
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.05
Grand average of hydropathy-0.922
Instability index56.88
Isoelectric point6.17
Molecular weight46532.00
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13400
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.37|      13|      18|     307|     319|       2
---------------------------------------------------------------------------
  307-  319 (25.94/12.34)	GRPQA....RPRQHQDA
  324-  340 (17.43/ 6.18)	GRSQSavseKPAAQLDA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.35|      17|      17|     269|     285|       3
---------------------------------------------------------------------------
  269-  285 (30.25/19.62)	QEQ.SAPRQSRPQELSNG
  288-  305 (24.10/14.01)	KEQfVAEMLARPSNVESG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13400 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVVDQTPQSMGPSSLEQEDRGAASTHMDEGDLFATPSTTIRLSEENPGSKFSDGMDGDGSVMNNASRDFGQRYPMNQEQVRRPPPMGQRYDPEPYWRQEQSAPRQSRPQELSNGQTKEQFVAEMLARPSNVESGPGRPQARPRQHQDASPAQGRSQSAVSEKPAAQLDANSVRAKLELAKNAKLEATKRKLQEGYQEFDNAKKQRNIQMVDPQNLPKQGNNNRNFQPSGKPRNNSNVNTSNRNWSR
172
417










Molecular Recognition Features






MoRF SequenceStartStop




1) RDYWLGFFR
6
14