<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13395

Description Uncharacterized protein
SequenceMASNMQAPGPPQPPRPPMMGSSAQPQNLGPPMPMQFRPVVPSQQPPQFMPPAAQQFRPVGQPMPGANIGMPGQMPHFPQPGQHLPHSNQGPPASQGVPMVYQPARPMSSAPMQPQQQTAYPGGHLPTMGAPMQPPTYTYQPTSIPPVVQAWGTGPGQNVPHVPHLVQSGHQPVSAPTTLPSVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAEKASNQQPDRESGIAASALVGSAASEPSTIPANQSSSAVGIIAPSSHDGSSNSAPPGAAPSHNVENTSSSIVGMQNGAPSTAVVPVATSTEVPLVATDAGASRNNNENSSLTTGVDTQDGTSVEDLEEAKKTMPVAGKINVTPLEEKTNEEEPVVYASKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRVKQRKARDDFLAMLEECKELTSLTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKATTQWRKVQERLEDDERYSRLEKIDRLDIFQEYIRHLEKEEEEQKRIQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSESYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINVKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSEEFRALDSETYARELFEECVVHLKERLKEKERLREEEKHAHGSDSDSENRHKRHKKDRDSSRRNGGHELEDGELGEDGEVN
Length883
PositionUnknown
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.07
Grand average of hydropathy-0.957
Instability index53.76
Isoelectric point5.55
Molecular weight99788.09
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13395
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.75|      17|      17|      22|      38|       1
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   22-   38 (38.08/15.61)	SAQPQNLGPPM.......PMQFRP
   42-   58 (31.50/11.79)	SQQPPQFMPPA.......AQQFRP
  138-  160 (24.16/ 7.52)	TYQPTSI.PPVvqawgtgPGQNVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.43|      16|      17|     325|     340|       2
---------------------------------------------------------------------------
  285-  303 (20.34/ 8.74)	SALVG.SAasePSTIPANQS
  304-  320 (19.47/ 8.04)	SSAVGiIA...PSSHDGSSN
  321-  336 (28.62/15.30)	SAPPG.AA...PSHNVENTS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     448.35|      66|      66|     489|     554|       3
---------------------------------------------------------------------------
  414-  486 (84.04/50.65)	EKT.N.......EE..EpvvyaskmEAK.........NAF.KSLLESV...NVESDWT.WDQTMRVIIND.KRYGAL......KT..LGERKQAFNEYLNQRKK..FE
  489-  554 (107.42/66.76)	EKR.V.......KQ..R........KAR.........DDF.LAMLEEC...KELTSLTRWSKAILMFEDD.ERFKAV......ER..PREREDLFENYLVELHK..KE
  562-  621 (88.54/53.75)	HKRyV.......AE..Y........RA............F....LESC...DFIKATTQWRKVQERLEDD.ERYSRL......EK..I.DRLDIFQEYIRHLEK..EE
  624-  701 (71.69/42.14)	QKR.IqkdqvrrQE..R........KNR.........DGF.RKMLEEHvadGTLNARTRWRDYCAQIKDS.ESYLAVasntsgST..PKE...LFDDVIEELDK..Q.
  706-  776 (38.05/18.96)	KTQ.I.......KEvvK........SGKipmttswtlEEFqTAILED....DALKGISTI.NVKLIYDDQlERLKEK......EQkeAKKRQRLGENF..........
  779-  831 (58.61/33.13)	...........................................LLYSI...KEISASSTWDDSKQLFEDS.EEFRAL......DS..ETYARELFEECVVHLKErlKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.15|      39|      39|     182|     220|       4
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  182-  220 (74.24/47.42)	VNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVEL
  223-  261 (71.91/45.69)	PLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.94|      16|      17|     365|     380|       7
---------------------------------------------------------------------------
  365-  380 (26.29/15.76)	TDAGASRNNNENSSLT
  385-  400 (25.65/15.21)	TQDGTSVEDLEEAKKT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.77|      11|      38|      80|      92|       9
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   80-   92 (20.93/15.31)	PGQHLPhsNQGPP
  121-  131 (24.84/11.62)	PGGHLP..TMGAP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13395 with Med35 domain of Kingdom Viridiplantae
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