<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13394

Description Uncharacterized protein (Fragment)
SequenceLFRGRDIYDVIEKAILVAATDSPHEFRRRRDGIVGQIYTARTVPAVPQGRAAGERSGRALEVSDKAGSKLASCTVAPAEEPEDNNDKKKGIAAAQHGNGDGDNNTDDTAYGAIGMEWLQSLSDQMDAETQEINEVLRIKEILLNHPEQSVDNLFDSLRRLQLMQLTADKIKSTEIGGAIVAVSKHKSHKIRMLVHEIIKDWKAIVDDWIAATKATMDSDSNKDMDISNAITTEDEVGLATPPMDIGALYLVSHATEIQNVSEFLHGMDDETTTTNLSMDKGGGCRPSNSRFDGFKPSSSTTPWSKDPVVVQALPAIRGPQPFDNGNPQELPGRKRRRSRNTNPLITFKKTQEEGSQVPRVRIKVNHSSTECAPRELVEKTLVEKKSYEENQGPISAAKELPPGQVLKKGMPTQSSAGPKVGTSKRKVQLTEMDIDETKHKLRGAYQEAEKSKQRRAIQVMELSDIAKSRQNHVVIRTPSTNSMNPTNRTHKMNRSQIIKSWENDRCK
Length507
PositionUnknown
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.04
Grand average of hydropathy-0.746
Instability index48.62
Isoelectric point8.45
Molecular weight56171.63
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13394
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.08|      44|     115|     293|     337|       1
---------------------------------------------------------------------------
  293-  337 (76.26/49.09)	GFKPSSSTTPW...SKDPVVVQALPAIRGPQPFdNGNPQELPGRKRRR
  409-  455 (69.82/40.41)	GMPTQSSAGPKvgtSKRKVQLTEMDIDETKHKL.RGAYQEAEKSKQRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.72|      24|     115|      93|     116|       2
---------------------------------------------------------------------------
   93-  116 (44.15/29.27)	AAQHGNGDGDNNTDDTAYGAIGME
  210-  233 (40.57/26.31)	AATKATMDSDSNKDMDISNAITTE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13394 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LASCTVAPAEEPEDNNDKKKGIAAAQHGNGDGDNNTDDTA
2) SEFLHGMDDETTTTNLSMDKGGGCRPSNSRFDGFKPSSSTTPWSKDPVVVQALPAIRGPQPFDNGNPQELPGRKRRRSRNTNPLITFKKTQEEGSQVPRVRIKVNHSSTECAPRELVEKTLVEKKSYEENQGPISAAKELPPGQVLKKGMPTQSSAGPKVGTSKRKVQLTEMDIDETKHKLRGAYQEAEKSKQRRAIQVMELSDIAKSRQNHVVIRTPSTNSMNPTNRTHKMNRSQIIKSWEND
70
261
109
504










Molecular Recognition Features






MoRF SequenceStartStop




NANANA