<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13382

Description Mediator of RNA polymerase II transcription subunit 29-like
SequenceMSNMGPGGGMGGGPDMAAQGGMGPQGGIINQGGMVPQGNMVPQGCMGPQGTMGPQGGMGSQGGIGPQGGMVAQGGMVPQGGMVSQGGMGPQVNMGPQGSIGSQMAMQSQPGPPMGPQQGAIQQSGPGAMSGSMAPMGSGGPGGMPGPMGGVPNVGGMPGPGGPHPPGTMIGPGSGPGPQQGPQPPPPGPPAGSSQSSASSQQDQQRYDNIVKVRMLIGSLKDSLSEVVRVAAMNIYHTAAVDNGVRASSEGAPPRLDKALEEFYSICNQIELNLKTIQECVLQFRDSQQYLPIPVQGAKSESSSHPDNALSYGQYIATIGAQVAFAKQVQEILADSANRMQQQQQQVQPIFH
Length352
PositionTail
OrganismTropilaelaps mercedesae
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Chelicerata> Arachnida> Acari> Parasitiformes> Mesostigmata> Gamasina> Dermanyssoidea> Laelapidae> Tropilaelaps.
Aromaticity0.03
Grand average of hydropathy-0.407
Instability index63.32
Isoelectric point5.49
Molecular weight35358.60
Publications
PubMed=28327890

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13382
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     219.63|      28|      28|      19|      46|       1
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   19-   46 (65.75/16.25)	QGGM.GPQGGIINQGGMVPQGNMVPQGCM
   56-   82 (53.87/11.72)	.GGM.GSQGGIGPQGGMVAQGGMVPQGGM
   85-  106 (44.16/ 8.02)	QGGM.GPQ......VNMGPQGSIGSQMAM
  141-  169 (55.85/12.48)	PGGMpGPMGGVPNVGGMPGPGGPHPPGTM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.60|      32|      51|     244|     279|       5
---------------------------------------------------------------------------
  244-  279 (45.65/42.18)	GVRASSEGAPprlDKAL...EEFYSICNQIELNlKTIQE
  297-  331 (48.95/31.34)	GAKSESSSHP...DNALsygQYIATIGAQVAFA.KQVQE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13382 with Med29 domain of Kingdom Metazoa
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