<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13349
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPLMMDNNDLADAVMAEIQIPSASMMDSMDDLFGEPTNLVVQAPLLPGPPPPAELVLRIAEMQRAGCCTKLAWCNNGCIARISPDGGQVNFHVTMDDASTGAQCVSDASSNPIIAQTGSEFVHLQYTSLGQELAVVDSVGNVQVFTGSTGLGRMSFAPTTGDSEAEGGRSDLDAVVGMYWLPQWPMDFRIPYVGPAVKTDGTWSTKLHYPDQQAPRLHHPVDGKTAFLYVTRNTSLTLCYQHDATKWGTASNTLESLSTLDETLSHAAFCQQDDKLLLVTHDLRRHMRVYTITIDWNGTQGKDQYRSGTLRIAPSLLFGHTVSLEYVAPQHSEGTLLTSLQIIPPVPIFAESSFPSYTTIVATFAQASYPADATQQAQSFTTICRWHLEQLTQNLHPSFAKLQKRAAPAVTLPNKNILRQQPDLVTAKVILTIQPMNHDTLIAFGASDGTVECRDRETWNVTAPTFGGTTTVTSLPQAGFEFTPSLEHSVHIACNTDCAYMITLGVDQKLRCKPAALRYGWQAIDDGILDISGMHETAIACVAREHTLLTHHSNASALEMFALLPPDLSPEQYRHLLFDITRALTRAHDLGSLDEKTKQRMLLGDNYIIRCLGAQLSLVPAPDAQPGIGAQLAWMVLTAKQAHFALFSSCSSTSPPDPATLHSLRGLAIWSLDLFTASLAALCAVHSSIAIKSDETPAAALRVHIASSSSSLLHLVLCSYPRTLLRYLALALTRYFKLVASSLPSSPSLQIKTDLLETISKIKTLPFRLEILAAPNGLLGEIDRAASEAYTAVGPRERSEIELTMLISPTPDVPAIMESAAESIWSRVLPRYLGEMDLGALYFLNASGLSLPSRETIGKSAKRKVDVLTKLPITGGEFSLLALSALAASVSAQQSSPDLVSIISVLQTGLPSSILQEALTNSAGLSSEIASEFRVATPTWFTALPTDIQTYLISAANSPSAFANATAGIASTLNGTAIMNSTSVAAAQSSILSSNSAEISSEVASASAAGTTSGGAGSGAATATSAGASSSSSAAGASMPTALYGMGLAGAVGLMGVLAL |
Length | 1060 |
Position | Tail |
Organism | Rachicladosporium sp. CCFEE 5018 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Dothideomycetidae> Cladosporiales> Cladosporiaceae> Rachicladosporium>
unclassified Rachicladosporium.
|
Aromaticity | 0.06 |
Grand average of hydropathy | 0.091 |
Instability index | 40.45 |
Isoelectric point | 5.43 |
Molecular weight | 112662.93 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP13349
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 72.05| 23| 106| 720| 745| 1
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720- 745 (35.27/36.88) YPRTLLRYLA....LALtrYFkLVAS..SLPS
825- 853 (36.78/25.17) WSRVLPRYLGemdlGAL..YF.LNASglSLPS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 205.69| 49| 133| 875| 925| 2
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875- 925 (72.44/43.44) GGEFSLLALSALAASVSAQQSSPDlvSIISVLQTGLPSSILQEALTNSAGL
938- 981 (64.35/33.24) PTWFTALPTDIQTYLISA.ANSP...SAFANATAGIASTLNGTAIMNS...
1009- 1054 (68.90/36.15) AGTTSGGAGSGAATATSAGASSSS.....SAAGASMPTALYGMGLAGAVGL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 382.41| 95| 96| 433| 528| 3
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242- 303 (57.53/25.37) .......................HDATKWGTASNTLESLSTLdET.L....SHAAF.....................................................CqQDDKLLLVT..HD.LRRH............MRVYT....ITIDWnGTQGKD.....
305- 429 (61.12/27.62) ...YRSGTLrIAPSLLFGhTV......SLEYVAPQHSEGTLL.TS.LqiipPVPIFaessfpsyttivatfaqasypadatqqaqsftticrwhleQLTQNL.HPSFAKL.QKRAAPAVT..LP.NKNI............LRQQPdlvtAKV..............
433- 528 (166.05/90.09) IQPMNHDTL.IAFGASDG.TVeCRDRETWNVTAPTFGGTTTV.TS.L....PQAGF........................................EFTPSLEHSVHIAC.NTDCAYMIT..LG.VDQK............LRCKP....AALRY.GWQAID..DGI
531- 628 (97.72/48.23) ISGM.HETA.IA..........CVAREHTLLTHHSNASALEM.FAlL....PP...........................................DLSP..EQYRHLLF.DITRALTRAhdLGsLDEKtkqrmllgdnyiIRCLG....AQLSL..VPAPDaqPGI
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