<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13347

Description Mediator of RNA polymerase II transcription subunit 6
SequenceMAAPADPLDEIEYSKPETVGFYTRNGMPYMHENMLHYYISESPFFDWGSKNGTEVQLSSTDPQRQQLLHDRREFERHLAAANGVEYAFVEGETMEFNAEGEVARGGMWVLRKQDRQKGVGPKGKDELTTLGTYYLMGEKMHQAPAVGDVLSAKLTAASTAMAKLYERAAELPRWSAAEGHTYLAASSKATAGSTASRGGTPERSRQNSVIGDTASMRSGSVEPVAGTVPGSKADEDRLANALLRSSMASFRAHGTEYSDENPLLGEPGHFTFSSSTAAVKKRKAEEEAAAQAAAKEKEARANSRAATPPSEISPFAVKKQPSPPAGMSEAKAGKADREKREKKDGKLRRRKSRHGGAATPGGVATPAPMTG
Length371
PositionHead
OrganismRachicladosporium sp. CCFEE 5018
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Cladosporiales> Cladosporiaceae> Rachicladosporium> unclassified Rachicladosporium.
Aromaticity0.06
Grand average of hydropathy-0.733
Instability index57.45
Isoelectric point8.77
Molecular weight39896.04
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13347
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     219.25|      62|     139|     167|     229|       1
---------------------------------------------------------------------------
  167-  229 (99.22/43.06)	RAAELPrWSAAEGHTYLAASS......KATAGSTASRGGTPERSRQNSVIGDTASMRSG.SVE....P..VAGTVP
  257-  326 (74.09/28.46)	YSDENP.LLGEPGHFTFSSSTaavkkrKAEEEAAAQAAAKEKEARANSRAATPPSEISPfAVKkqpsP..PAG...
  328-  368 (45.94/15.18)	....................S......EAKAGK.ADR...EKREKKDGKLRRRKSRHGG.AAT....PggVATPAP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13347 with Med6 domain of Kingdom Fungi
Unable to open file!